FFCP PHASE1:Hg19::chr2:166095942..166095965,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6326 | |EntrezGene=6326 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10588 | |HGNC=10588 | ||
|TSSclassifier=strong | |||
|UniProt=Q99250,A8K0U1 | |UniProt=Q99250,A8K0U1 | ||
|association_with_transcript=30bp_to_ENST00000357398,ENST00000375437,ENST00000424833,NM_001040142,uc002udc.2_5end | |association_with_transcript=30bp_to_ENST00000357398,ENST00000375437,ENST00000424833,NM_001040142,uc002udc.2_5end | ||
|cluster_id=chr2:166095942..166095965,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_2_at_SCN2A_5end | |description=CAGE_peak_2_at_SCN2A_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.71e-25;82!UBERON:0006215;1.26e-09;3!UBERON:0006241;8.61e-08;3!UBERON:0003057;8.61e-08;3 | |ontology_enrichment_development_v019=UBERON:0006601;1.71e-25;82!UBERON:0006215;1.26e-09;3!UBERON:0006241;8.61e-08;3!UBERON:0003057;8.61e-08;3 | ||
|ontology_enrichment_disease=DOID:171!6.94e-08!10;DOID:169!2.21e-07!6 | |ontology_enrichment_disease=DOID:171!6.94e-08!10;DOID:169!2.21e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:171;1.06e-07;10 | |ontology_enrichment_disease_v019=DOID:171;1.06e-07;10 | ||
|ontology_enrichment_disease_v019_2=DOID:171,1.04e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.86e-77!57;UBERON:0005068!5.86e-77!57;UBERON:0006241!5.86e-77!57;UBERON:0007135!5.86e-77!57;UBERON:0000073!4.34e-74!94;UBERON:0001016!4.34e-74!94;UBERON:0001017!2.39e-72!82;UBERON:0005743!1.13e-70!86;UBERON:0002616!1.18e-64!59;UBERON:0000955!8.62e-63!69;UBERON:0006238!8.62e-63!69;UBERON:0002780!3.18e-62!41;UBERON:0001890!3.18e-62!41;UBERON:0006240!3.18e-62!41;UBERON:0007023!3.83e-61!115;UBERON:0003080!1.80e-60!42;UBERON:0002346!1.25e-59!90;UBERON:0003075!1.43e-58!86;UBERON:0007284!1.43e-58!86;UBERON:0001893!3.08e-50!34;UBERON:0002020!3.42e-50!34;UBERON:0003528!3.42e-50!34;UBERON:0002791!2.16e-48!33;UBERON:0001869!3.57e-47!32;UBERON:0003056!2.82e-44!61;UBERON:0000924!1.08e-40!173;UBERON:0006601!1.08e-40!173;UBERON:0002619!3.28e-40!22;UBERON:0004121!2.70e-39!169;UBERON:0000033!5.54e-37!123;UBERON:0001950!1.83e-36!20;UBERON:0000956!1.07e-34!25;UBERON:0000203!1.07e-34!25;UBERON:0000153!1.74e-34!129;UBERON:0007811!1.74e-34!129;UBERON:0000025!2.16e-18!194;UBERON:0002420!2.24e-17!9;UBERON:0007245!2.24e-17!9;UBERON:0010009!2.24e-17!9;UBERON:0010011!2.24e-17!9;UBERON:0000454!2.24e-17!9;UBERON:0003076!6.44e-17!15;UBERON:0003057!6.44e-17!15;UBERON:0002308!7.03e-17!9;UBERON:0000125!7.03e-17!9;UBERON:0004111!2.69e-14!241;UBERON:0004732!7.28e-14!13;UBERON:0009663!1.22e-13!7;UBERON:0001894!3.84e-13!7;UBERON:0006222!3.84e-13!7;UBERON:0000200!6.38e-13!6;UBERON:0001871!1.46e-12!7;UBERON:0004733!1.76e-12!12;UBERON:0002028!1.76e-12!12;UBERON:0007277!1.76e-12!12;UBERON:0000477!2.12e-12!286;UBERON:0000064!1.07e-11!219;UBERON:0002298!4.26e-11!8;UBERON:0000349!5.78e-11!5;UBERON:0001872!7.34e-11!5;UBERON:0002021!1.25e-10!5;UBERON:0000483!8.59e-10!309;UBERON:0000119!1.52e-09!312;UBERON:0000369!4.51e-09!4;UBERON:0002435!4.51e-09!4;UBERON:0000204!4.51e-09!4;UBERON:0010082!4.51e-09!4;UBERON:0000475!1.57e-08!365;UBERON:0003296!2.27e-08!4;UBERON:0010133!2.27e-08!4;UBERON:0002680!4.85e-08!9;UBERON:0001895!4.85e-08!9;UBERON:0010092!4.85e-08!9;UBERON:0002771!2.40e-07!3;UBERON:0005383!3.32e-07!3;UBERON:0005382!3.32e-07!3;UBERON:0000062!3.33e-07!511;UBERON:0000481!4.62e-07!347;UBERON:0000922!7.58e-07!612;UBERON:0002050!9.89e-07!605;UBERON:0005423!9.89e-07!605 | |ontology_enrichment_uberon=UBERON:0001049!5.86e-77!57;UBERON:0005068!5.86e-77!57;UBERON:0006241!5.86e-77!57;UBERON:0007135!5.86e-77!57;UBERON:0000073!4.34e-74!94;UBERON:0001016!4.34e-74!94;UBERON:0001017!2.39e-72!82;UBERON:0005743!1.13e-70!86;UBERON:0002616!1.18e-64!59;UBERON:0000955!8.62e-63!69;UBERON:0006238!8.62e-63!69;UBERON:0002780!3.18e-62!41;UBERON:0001890!3.18e-62!41;UBERON:0006240!3.18e-62!41;UBERON:0007023!3.83e-61!115;UBERON:0003080!1.80e-60!42;UBERON:0002346!1.25e-59!90;UBERON:0003075!1.43e-58!86;UBERON:0007284!1.43e-58!86;UBERON:0001893!3.08e-50!34;UBERON:0002020!3.42e-50!34;UBERON:0003528!3.42e-50!34;UBERON:0002791!2.16e-48!33;UBERON:0001869!3.57e-47!32;UBERON:0003056!2.82e-44!61;UBERON:0000924!1.08e-40!173;UBERON:0006601!1.08e-40!173;UBERON:0002619!3.28e-40!22;UBERON:0004121!2.70e-39!169;UBERON:0000033!5.54e-37!123;UBERON:0001950!1.83e-36!20;UBERON:0000956!1.07e-34!25;UBERON:0000203!1.07e-34!25;UBERON:0000153!1.74e-34!129;UBERON:0007811!1.74e-34!129;UBERON:0000025!2.16e-18!194;UBERON:0002420!2.24e-17!9;UBERON:0007245!2.24e-17!9;UBERON:0010009!2.24e-17!9;UBERON:0010011!2.24e-17!9;UBERON:0000454!2.24e-17!9;UBERON:0003076!6.44e-17!15;UBERON:0003057!6.44e-17!15;UBERON:0002308!7.03e-17!9;UBERON:0000125!7.03e-17!9;UBERON:0004111!2.69e-14!241;UBERON:0004732!7.28e-14!13;UBERON:0009663!1.22e-13!7;UBERON:0001894!3.84e-13!7;UBERON:0006222!3.84e-13!7;UBERON:0000200!6.38e-13!6;UBERON:0001871!1.46e-12!7;UBERON:0004733!1.76e-12!12;UBERON:0002028!1.76e-12!12;UBERON:0007277!1.76e-12!12;UBERON:0000477!2.12e-12!286;UBERON:0000064!1.07e-11!219;UBERON:0002298!4.26e-11!8;UBERON:0000349!5.78e-11!5;UBERON:0001872!7.34e-11!5;UBERON:0002021!1.25e-10!5;UBERON:0000483!8.59e-10!309;UBERON:0000119!1.52e-09!312;UBERON:0000369!4.51e-09!4;UBERON:0002435!4.51e-09!4;UBERON:0000204!4.51e-09!4;UBERON:0010082!4.51e-09!4;UBERON:0000475!1.57e-08!365;UBERON:0003296!2.27e-08!4;UBERON:0010133!2.27e-08!4;UBERON:0002680!4.85e-08!9;UBERON:0001895!4.85e-08!9;UBERON:0010092!4.85e-08!9;UBERON:0002771!2.40e-07!3;UBERON:0005383!3.32e-07!3;UBERON:0005382!3.32e-07!3;UBERON:0000062!3.33e-07!511;UBERON:0000481!4.62e-07!347;UBERON:0000922!7.58e-07!612;UBERON:0002050!9.89e-07!605;UBERON:0005423!9.89e-07!605 | ||
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|short_description=p2@SCN2A | |short_description=p2@SCN2A | ||
}} | }} |
Latest revision as of 23:34, 17 September 2015
Short description: | p2@SCN2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SCN2A_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 30bp_to_ENST00000357398, ENST00000375437, ENST00000424833, NM_001040142, uc002udc.2_5end |
EntrezGene: | SCN2A |
HGNC: | 10588 |
UniProt: | Q99250A8K0U1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.04e-07 | 10 |