FF:11521-119H9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004997 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004997 | ||
|accession_numbers=CAGE;DRX008301;DRR009173;DRZ000598;DRZ001983;DRZ011948;DRZ013333 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037229;DRR041595;DRZ007237 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0001281,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0002368,UBERON:0000353,UBERON:0003497,UBERON:0003909,UBERON:0005177,UBERON:0002365,UBERON:0007500,UBERON:0001981,UBERON:0005172,UBERON:0006925,UBERON:0002049,UBERON:0002530,UBERON:0003835,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0005173,UBERON:0004535,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0004647,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002423,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000181,CL:0000417,CL:0000668,CL:0000215,CL:0000412,CL:0000255,CL:0000115,CL:0000182,CL:0002262,CL:1000398 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000076 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11521-119H9 | |id=FF:11521-119H9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000076;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs12075 | |||
|library_id_phase_based=2:CNhs12075 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11521 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.ACAGTG.11521 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11521 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.ACAGTG.11521 | |||
|name=Hepatic Sinusoidal Endothelial Cells, donor1 | |name=Hepatic Sinusoidal Endothelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12075,LSID838,release011,COMPLETED | |profile_hcage=CNhs12075,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0797705855628049,0,-0.272770030806101,0.344961999558763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0867656053007634,0,0,0,0,0,0.295847274651304,0,0,0.260848581140499,0,0,0,0,0,0,0,0,0,0,0,0,0.265741527515367,0.240088615649191,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.240088615649191,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307023762842688,0,0,0,0.166576605280744,0.32969817926563,0,0,0,0,-0.0980353512377064,0.281112302375242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.0350843543673706,-0.0485599646844192,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC5005 | |rna_catalog_number=SC5005 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119H9 | |rna_tube_id=119H9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.ACAGTG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.17561011876485e-210!GO:0005737;cytoplasm;1.27981334940737e-189!GO:0043226;organelle;4.11922064567643e-165!GO:0043229;intracellular organelle;6.43140669477541e-165!GO:0043231;intracellular membrane-bound organelle;1.09477540736159e-162!GO:0043227;membrane-bound organelle;2.77937488150047e-162!GO:0044444;cytoplasmic part;1.65802455591762e-141!GO:0044422;organelle part;3.15981431124938e-125!GO:0044446;intracellular organelle part;3.87658796062963e-124!GO:0032991;macromolecular complex;2.38558472553095e-81!GO:0044237;cellular metabolic process;3.82261071127692e-73!GO:0005739;mitochondrion;4.22636536254901e-73!GO:0044238;primary metabolic process;5.26294784311734e-72!GO:0005515;protein binding;2.74208619558399e-70!GO:0030529;ribonucleoprotein complex;7.35892254579905e-68!GO:0043170;macromolecule metabolic process;1.02177313511725e-63!GO:0043233;organelle lumen;1.9038179438474e-58!GO:0031974;membrane-enclosed lumen;1.9038179438474e-58!GO:0031090;organelle membrane;5.28869147887985e-54!GO:0003723;RNA binding;4.9683032223949e-50!GO:0044428;nuclear part;4.9683032223949e-50!GO:0019538;protein metabolic process;6.90407235846815e-50!GO:0044429;mitochondrial part;1.01241720583761e-49!GO:0005634;nucleus;8.14820814041069e-49!GO:0005840;ribosome;2.37192776478344e-45!GO:0044260;cellular macromolecule metabolic process;5.53782389273604e-44!GO:0044267;cellular protein metabolic process;8.03888582267185e-44!GO:0031967;organelle envelope;1.91859791267732e-42!GO:0043234;protein complex;2.26190779732846e-42!GO:0031975;envelope;4.15685309313956e-42!GO:0003735;structural constituent of ribosome;2.59838224700647e-41!GO:0006412;translation;1.54822985804567e-40!GO:0016043;cellular component organization and biogenesis;2.41653136922328e-40!GO:0005829;cytosol;2.05275844256179e-37!GO:0009058;biosynthetic process;6.50677163820117e-37!GO:0033279;ribosomal subunit;1.3959467314923e-36!GO:0015031;protein transport;1.66215034990694e-34!GO:0005740;mitochondrial envelope;2.54143993947929e-34!GO:0033036;macromolecule localization;8.00497607494461e-34!GO:0044249;cellular biosynthetic process;9.73952333943093e-34!GO:0009059;macromolecule biosynthetic process;3.36272806625114e-33!GO:0006396;RNA processing;8.31579179916202e-33!GO:0031966;mitochondrial membrane;1.74183241425756e-32!GO:0045184;establishment of protein localization;8.20505920914666e-32!GO:0008104;protein localization;1.70821302531288e-31!GO:0043283;biopolymer metabolic process;2.76508241401253e-31!GO:0031981;nuclear lumen;1.04893324410629e-30!GO:0019866;organelle inner membrane;2.7107717738438e-30!GO:0006996;organelle organization and biogenesis;2.21569168040547e-29!GO:0005743;mitochondrial inner membrane;3.14535404303624e-28!GO:0046907;intracellular transport;5.30502373474299e-28!GO:0016071;mRNA metabolic process;9.61498913186869e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.81403239935057e-26!GO:0065003;macromolecular complex assembly;1.81403239935057e-26!GO:0043228;non-membrane-bound organelle;3.5383771194026e-26!GO:0043232;intracellular non-membrane-bound organelle;3.5383771194026e-26!GO:0008380;RNA splicing;1.14774466764315e-24!GO:0022607;cellular component assembly;1.07555901028425e-23!GO:0010467;gene expression;1.72236495262294e-23!GO:0006886;intracellular protein transport;1.85222310544313e-23!GO:0006397;mRNA processing;2.21825443877969e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.35992578419827e-23!GO:0006119;oxidative phosphorylation;2.93284295113747e-22!GO:0044445;cytosolic part;1.36312790057188e-21!GO:0012505;endomembrane system;1.20763264474135e-20!GO:0006259;DNA metabolic process;3.4382635969303e-20!GO:0015934;large ribosomal subunit;4.84336718909459e-20!GO:0044455;mitochondrial membrane part;6.86561593614706e-20!GO:0005654;nucleoplasm;1.27195724544215e-19!GO:0005783;endoplasmic reticulum;2.49095602751259e-19!GO:0000166;nucleotide binding;3.52954028358756e-19!GO:0031980;mitochondrial lumen;4.06934007986083e-19!GO:0005759;mitochondrial matrix;4.06934007986083e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.47163038751106e-19!GO:0051649;establishment of cellular localization;2.00575018486294e-18!GO:0051641;cellular localization;3.97888050476855e-18!GO:0005681;spliceosome;1.12918858311584e-17!GO:0015935;small ribosomal subunit;1.45203315724538e-17!GO:0005746;mitochondrial respiratory chain;2.36647108481049e-17!GO:0007049;cell cycle;4.35540747602241e-17!GO:0044451;nucleoplasm part;2.64813625353287e-16!GO:0044432;endoplasmic reticulum part;2.74781880844035e-16!GO:0006457;protein folding;3.48775157097949e-16!GO:0051186;cofactor metabolic process;3.70397842776034e-16!GO:0005794;Golgi apparatus;3.70397842776034e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.28254218433654e-16!GO:0050136;NADH dehydrogenase (quinone) activity;8.11626227777955e-16!GO:0003954;NADH dehydrogenase activity;8.11626227777955e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.11626227777955e-16!GO:0048770;pigment granule;8.79401169163161e-16!GO:0042470;melanosome;8.79401169163161e-16!GO:0016874;ligase activity;8.84923026475245e-16!GO:0016462;pyrophosphatase activity;1.13459279290037e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.15033634483137e-15!GO:0043412;biopolymer modification;1.27196873643004e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.28455388890267e-15!GO:0017111;nucleoside-triphosphatase activity;5.17856739546762e-15!GO:0008134;transcription factor binding;7.08565037868038e-15!GO:0006464;protein modification process;9.62570726509309e-15!GO:0006512;ubiquitin cycle;1.64039511417178e-14!GO:0016192;vesicle-mediated transport;2.22439648865575e-14!GO:0032553;ribonucleotide binding;2.56209323004515e-14!GO:0032555;purine ribonucleotide binding;2.56209323004515e-14!GO:0044265;cellular macromolecule catabolic process;3.87244891661397e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.73155159433266e-14!GO:0042773;ATP synthesis coupled electron transport;6.73155159433266e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.51469773919265e-14!GO:0045271;respiratory chain complex I;7.51469773919265e-14!GO:0005747;mitochondrial respiratory chain complex I;7.51469773919265e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.58371352900319e-14!GO:0017076;purine nucleotide binding;1.00932336438547e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.21662186319504e-13!GO:0022402;cell cycle process;1.98912167910487e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.10195132167257e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.41295319780304e-13!GO:0044248;cellular catabolic process;3.69414387897997e-13!GO:0005761;mitochondrial ribosome;4.51702190725933e-13!GO:0000313;organellar ribosome;4.51702190725933e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.84833213937763e-13!GO:0022618;protein-RNA complex assembly;1.58074103530729e-12!GO:0009057;macromolecule catabolic process;1.64216418209157e-12!GO:0006732;coenzyme metabolic process;1.71079502523254e-12!GO:0043285;biopolymer catabolic process;2.9711351915706e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.46965617357919e-12!GO:0006605;protein targeting;3.80770198573257e-12!GO:0019941;modification-dependent protein catabolic process;5.89234186799386e-12!GO:0043632;modification-dependent macromolecule catabolic process;5.89234186799386e-12!GO:0044257;cellular protein catabolic process;6.82722046550342e-12!GO:0043687;post-translational protein modification;7.62559017749937e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.65887039391034e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.03192357694633e-11!GO:0000278;mitotic cell cycle;1.07566094113409e-11!GO:0005789;endoplasmic reticulum membrane;1.21410758495364e-11!GO:0009055;electron carrier activity;3.50412971969419e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.31166001010732e-11!GO:0000375;RNA splicing, via transesterification reactions;4.31166001010732e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.31166001010732e-11!GO:0005730;nucleolus;4.85255622389346e-11!GO:0012501;programmed cell death;6.04257516368302e-11!GO:0051082;unfolded protein binding;6.22622296114e-11!GO:0006915;apoptosis;7.7132313123303e-11!GO:0032559;adenyl ribonucleotide binding;8.77718745675351e-11!GO:0048193;Golgi vesicle transport;1.11192272792647e-10!GO:0005524;ATP binding;1.17710292053095e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.5566390916212e-10!GO:0030163;protein catabolic process;4.05120819885832e-10!GO:0030554;adenyl nucleotide binding;4.13476056024165e-10!GO:0006974;response to DNA damage stimulus;4.23449438689152e-10!GO:0008135;translation factor activity, nucleic acid binding;4.86022089627953e-10!GO:0051276;chromosome organization and biogenesis;5.14920508563428e-10!GO:0006323;DNA packaging;7.90079033056457e-10!GO:0008219;cell death;1.28944836304828e-09!GO:0016265;death;1.28944836304828e-09!GO:0006163;purine nucleotide metabolic process;1.29719393078903e-09!GO:0003712;transcription cofactor activity;1.34682805978961e-09!GO:0008639;small protein conjugating enzyme activity;1.66977777254207e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.67713631851094e-09!GO:0005635;nuclear envelope;1.75075203962716e-09!GO:0003676;nucleic acid binding;2.58661603641823e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.73366723696333e-09!GO:0004842;ubiquitin-protein ligase activity;2.99478563107006e-09!GO:0009150;purine ribonucleotide metabolic process;3.09534503802121e-09!GO:0051188;cofactor biosynthetic process;4.89542415337493e-09!GO:0008565;protein transporter activity;5.19071914285498e-09!GO:0009259;ribonucleotide metabolic process;5.90061785997831e-09!GO:0005793;ER-Golgi intermediate compartment;7.17995777571467e-09!GO:0051726;regulation of cell cycle;7.69570174280491e-09!GO:0044427;chromosomal part;8.90838344053515e-09!GO:0006164;purine nucleotide biosynthetic process;9.46120946669591e-09!GO:0019787;small conjugating protein ligase activity;9.4809014075243e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.21997287914401e-08!GO:0005694;chromosome;1.57208135038781e-08!GO:0000074;regulation of progression through cell cycle;1.5920161538703e-08!GO:0005773;vacuole;1.5920161538703e-08!GO:0006461;protein complex assembly;1.99245562264936e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.25623014458689e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.21156349627287e-08!GO:0042623;ATPase activity, coupled;3.63214162327101e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.85519306590184e-08!GO:0009141;nucleoside triphosphate metabolic process;3.95388998958503e-08!GO:0022403;cell cycle phase;4.06133595428338e-08!GO:0009117;nucleotide metabolic process;4.09960226098456e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.30605938465378e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.30605938465378e-08!GO:0006793;phosphorus metabolic process;4.47434535613166e-08!GO:0006796;phosphate metabolic process;4.47434535613166e-08!GO:0000785;chromatin;4.64396733644161e-08!GO:0009056;catabolic process;4.79471144462234e-08!GO:0031965;nuclear membrane;5.65998203309168e-08!GO:0044453;nuclear membrane part;6.13035956222709e-08!GO:0015986;ATP synthesis coupled proton transport;6.45449083380181e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.45449083380181e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.619970765479e-08!GO:0006333;chromatin assembly or disassembly;6.73481107578502e-08!GO:0048523;negative regulation of cellular process;7.94209439793553e-08!GO:0009260;ribonucleotide biosynthetic process;7.94209439793553e-08!GO:0019829;cation-transporting ATPase activity;8.04885817532373e-08!GO:0000087;M phase of mitotic cell cycle;8.04885817532373e-08!GO:0016604;nuclear body;8.04885817532373e-08!GO:0006281;DNA repair;8.4091979960679e-08!GO:0007067;mitosis;8.561057494299e-08!GO:0009060;aerobic respiration;9.26865905578085e-08!GO:0016887;ATPase activity;1.02288659889986e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.03349772236933e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.03349772236933e-07!GO:0006446;regulation of translational initiation;1.18171608826846e-07!GO:0016881;acid-amino acid ligase activity;1.18443710032517e-07!GO:0006913;nucleocytoplasmic transport;1.31754543618632e-07!GO:0003743;translation initiation factor activity;1.32622757791968e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.39067593802936e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.39067593802936e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.42885990379189e-07!GO:0051301;cell division;1.44603783252797e-07!GO:0044431;Golgi apparatus part;1.52767435710717e-07!GO:0006413;translational initiation;1.59455325106821e-07!GO:0000323;lytic vacuole;1.71349113070611e-07!GO:0005764;lysosome;1.71349113070611e-07!GO:0046034;ATP metabolic process;1.94860617748962e-07!GO:0016310;phosphorylation;2.08795942454675e-07!GO:0016070;RNA metabolic process;2.53951771820608e-07!GO:0051169;nuclear transport;2.53951771820608e-07!GO:0009719;response to endogenous stimulus;2.80189095147933e-07!GO:0065004;protein-DNA complex assembly;2.89503213672423e-07!GO:0016740;transferase activity;2.98347416678322e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.53945541027756e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.46854504197507e-07!GO:0006754;ATP biosynthetic process;5.49158726724694e-07!GO:0006753;nucleoside phosphate metabolic process;5.49158726724694e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.51330123926534e-07!GO:0042254;ribosome biogenesis and assembly;6.71929620030605e-07!GO:0009108;coenzyme biosynthetic process;6.77634234391219e-07!GO:0017038;protein import;6.86716078892318e-07!GO:0005839;proteasome core complex (sensu Eukaryota);7.67046211026639e-07!GO:0005788;endoplasmic reticulum lumen;8.77277655914805e-07!GO:0045333;cellular respiration;8.77277655914805e-07!GO:0031988;membrane-bound vesicle;8.80410539540949e-07!GO:0045259;proton-transporting ATP synthase complex;9.43155342864258e-07!GO:0006260;DNA replication;1.02266806598403e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.08319950873954e-06!GO:0050794;regulation of cellular process;1.25633424618154e-06!GO:0016491;oxidoreductase activity;1.28142825256347e-06!GO:0019899;enzyme binding;1.43073896649567e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.50531348011913e-06!GO:0006366;transcription from RNA polymerase II promoter;1.58034090884621e-06!GO:0006399;tRNA metabolic process;1.69446933981855e-06!GO:0005768;endosome;1.73891950150771e-06!GO:0006334;nucleosome assembly;1.91931917468911e-06!GO:0006099;tricarboxylic acid cycle;1.93749461902488e-06!GO:0046356;acetyl-CoA catabolic process;1.93749461902488e-06!GO:0048519;negative regulation of biological process;2.20711409076062e-06!GO:0031497;chromatin assembly;2.47786708331771e-06!GO:0003924;GTPase activity;2.59153028997957e-06!GO:0005525;GTP binding;2.99479754513813e-06!GO:0016787;hydrolase activity;3.12800387882388e-06!GO:0007005;mitochondrion organization and biogenesis;3.22279025634601e-06!GO:0006084;acetyl-CoA metabolic process;3.84450034838457e-06!GO:0031410;cytoplasmic vesicle;4.17017764520791e-06!GO:0065002;intracellular protein transport across a membrane;4.18799609553091e-06!GO:0031982;vesicle;4.57982777876667e-06!GO:0003697;single-stranded DNA binding;4.84066246413922e-06!GO:0016568;chromatin modification;4.89056875924861e-06!GO:0042981;regulation of apoptosis;4.93699688456239e-06!GO:0043067;regulation of programmed cell death;5.15821625335283e-06!GO:0030036;actin cytoskeleton organization and biogenesis;5.80534804638595e-06!GO:0007264;small GTPase mediated signal transduction;5.89540295918038e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.07228555930685e-06!GO:0004812;aminoacyl-tRNA ligase activity;6.07228555930685e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.07228555930685e-06!GO:0005643;nuclear pore;6.39109324382366e-06!GO:0004298;threonine endopeptidase activity;6.52450057366988e-06!GO:0051246;regulation of protein metabolic process;6.55049269067118e-06!GO:0031252;leading edge;6.6315758577985e-06!GO:0016044;membrane organization and biogenesis;6.73012077059078e-06!GO:0000279;M phase;6.98986599298119e-06!GO:0006916;anti-apoptosis;7.22550637269346e-06!GO:0051187;cofactor catabolic process;7.23500924763283e-06!GO:0043069;negative regulation of programmed cell death;7.383617124611e-06!GO:0030120;vesicle coat;7.8055571151941e-06!GO:0030662;coated vesicle membrane;7.8055571151941e-06!GO:0045786;negative regulation of progression through cell cycle;8.21705728210637e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.61179640518014e-06!GO:0000139;Golgi membrane;8.79390553476358e-06!GO:0043066;negative regulation of apoptosis;1.01686233975081e-05!GO:0048475;coated membrane;1.04073525418422e-05!GO:0030117;membrane coat;1.04073525418422e-05!GO:0005762;mitochondrial large ribosomal subunit;1.04360084990945e-05!GO:0000315;organellar large ribosomal subunit;1.04360084990945e-05!GO:0032446;protein modification by small protein conjugation;1.04680472237751e-05!GO:0005667;transcription factor complex;1.06760684566296e-05!GO:0015630;microtubule cytoskeleton;1.13409914558663e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.19134621163484e-05!GO:0005770;late endosome;1.30071659952286e-05!GO:0016607;nuclear speck;1.45178592881898e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.56586704624094e-05!GO:0009109;coenzyme catabolic process;1.67302452924452e-05!GO:0006752;group transfer coenzyme metabolic process;1.70438345974126e-05!GO:0043038;amino acid activation;1.90157936632955e-05!GO:0006418;tRNA aminoacylation for protein translation;1.90157936632955e-05!GO:0043039;tRNA aminoacylation;1.90157936632955e-05!GO:0016567;protein ubiquitination;1.90157936632955e-05!GO:0046930;pore complex;2.01203717389513e-05!GO:0003714;transcription corepressor activity;2.13609218685217e-05!GO:0008654;phospholipid biosynthetic process;2.24378711710221e-05!GO:0030029;actin filament-based process;2.48737831047526e-05!GO:0032561;guanyl ribonucleotide binding;2.64152991462007e-05!GO:0019001;guanyl nucleotide binding;2.64152991462007e-05!GO:0006091;generation of precursor metabolites and energy;2.82654385481642e-05!GO:0045454;cell redox homeostasis;2.90187818210861e-05!GO:0007243;protein kinase cascade;3.06485120740841e-05!GO:0000245;spliceosome assembly;3.22117274761638e-05!GO:0016779;nucleotidyltransferase activity;3.4948815916139e-05!GO:0000151;ubiquitin ligase complex;3.54790081568827e-05!GO:0008047;enzyme activator activity;4.38286972943754e-05!GO:0044440;endosomal part;4.54481484695167e-05!GO:0010008;endosome membrane;4.54481484695167e-05!GO:0008026;ATP-dependent helicase activity;5.23691258008394e-05!GO:0016853;isomerase activity;5.75857907042403e-05!GO:0009165;nucleotide biosynthetic process;7.7088948648872e-05!GO:0004386;helicase activity;7.87349120438922e-05!GO:0016564;transcription repressor activity;7.94988973158349e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.83641579014094e-05!GO:0007010;cytoskeleton organization and biogenesis;9.49368005859214e-05!GO:0051329;interphase of mitotic cell cycle;9.81762066023773e-05!GO:0006364;rRNA processing;0.000101244875600514!GO:0005813;centrosome;0.000101990742348649!GO:0005769;early endosome;0.000126721776804949!GO:0003713;transcription coactivator activity;0.000142351506196343!GO:0044262;cellular carbohydrate metabolic process;0.000155485106626166!GO:0051170;nuclear import;0.000156301032713321!GO:0006606;protein import into nucleus;0.00017572214735041!GO:0031968;organelle outer membrane;0.00018611294915373!GO:0005798;Golgi-associated vesicle;0.00019272017274371!GO:0016049;cell growth;0.000196307805415117!GO:0019867;outer membrane;0.000202823935325803!GO:0051427;hormone receptor binding;0.000203793446456571!GO:0043566;structure-specific DNA binding;0.000203793446456571!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000205978819415981!GO:0006403;RNA localization;0.000210552465858616!GO:0005774;vacuolar membrane;0.000223328840063551!GO:0016072;rRNA metabolic process;0.000224702810013087!GO:0050657;nucleic acid transport;0.000230120914674598!GO:0051236;establishment of RNA localization;0.000230120914674598!GO:0050658;RNA transport;0.000230120914674598!GO:0008361;regulation of cell size;0.00025015357992342!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00025015357992342!GO:0051325;interphase;0.000260538153232761!GO:0005741;mitochondrial outer membrane;0.000268643067065466!GO:0016126;sterol biosynthetic process;0.000281938545471819!GO:0005096;GTPase activator activity;0.000294842316583042!GO:0030867;rough endoplasmic reticulum membrane;0.000298271721938249!GO:0007040;lysosome organization and biogenesis;0.000341567698736629!GO:0035257;nuclear hormone receptor binding;0.00040119896133012!GO:0005815;microtubule organizing center;0.000438840902136303!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00043980763024736!GO:0015399;primary active transmembrane transporter activity;0.00043980763024736!GO:0001558;regulation of cell growth;0.000441621592248667!GO:0050789;regulation of biological process;0.000457935007118463!GO:0033116;ER-Golgi intermediate compartment membrane;0.000469971200244631!GO:0007265;Ras protein signal transduction;0.000496245465776244!GO:0016859;cis-trans isomerase activity;0.000503060364823141!GO:0006897;endocytosis;0.000506629109698105!GO:0010324;membrane invagination;0.000506629109698105!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000526517965935847!GO:0005905;coated pit;0.000536304458193385!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000540654859212724!GO:0006695;cholesterol biosynthetic process;0.000561659151519676!GO:0006613;cotranslational protein targeting to membrane;0.000561659151519676!GO:0000314;organellar small ribosomal subunit;0.000576130605246172!GO:0005763;mitochondrial small ribosomal subunit;0.000576130605246172!GO:0044437;vacuolar part;0.000650211803840429!GO:0005765;lysosomal membrane;0.000703396879850689!GO:0065009;regulation of a molecular function;0.000704200377537445!GO:0005048;signal sequence binding;0.00071200124510161!GO:0003899;DNA-directed RNA polymerase activity;0.00080399658205535!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000804976831299997!GO:0000786;nucleosome;0.000817222313442473!GO:0046474;glycerophospholipid biosynthetic process;0.000904667213865113!GO:0048522;positive regulation of cellular process;0.00103676506699367!GO:0008250;oligosaccharyl transferase complex;0.00104647213122425!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00106795142422625!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00107994030161385!GO:0048471;perinuclear region of cytoplasm;0.00108120510781756!GO:0007033;vacuole organization and biogenesis;0.00108120510781756!GO:0043623;cellular protein complex assembly;0.00109816813873641!GO:0006818;hydrogen transport;0.00114950185687567!GO:0051920;peroxiredoxin activity;0.00121764852991873!GO:0015980;energy derivation by oxidation of organic compounds;0.00122774553709223!GO:0005083;small GTPase regulator activity;0.00125776326965959!GO:0019843;rRNA binding;0.00130954398805073!GO:0015992;proton transport;0.00132439806627112!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00143632665340678!GO:0007242;intracellular signaling cascade;0.00146698434419202!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00146698434419202!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00146698434419202!GO:0006950;response to stress;0.00148717902370379!GO:0008632;apoptotic program;0.00154936602593606!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00164328860399072!GO:0051028;mRNA transport;0.00164506446846923!GO:0051087;chaperone binding;0.00172125090443798!GO:0006414;translational elongation;0.00176908759843437!GO:0051789;response to protein stimulus;0.00182319438441142!GO:0006986;response to unfolded protein;0.00182319438441142!GO:0042802;identical protein binding;0.00192313857375892!GO:0008092;cytoskeletal protein binding;0.0019443398396607!GO:0003724;RNA helicase activity;0.00201519070239797!GO:0031902;late endosome membrane;0.00204587984354241!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00223648573911938!GO:0043492;ATPase activity, coupled to movement of substances;0.00235768771297687!GO:0030133;transport vesicle;0.00241513252790617!GO:0018196;peptidyl-asparagine modification;0.00250222421735992!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00250222421735992!GO:0009967;positive regulation of signal transduction;0.00262646362531891!GO:0016563;transcription activator activity;0.00278203454099885!GO:0005885;Arp2/3 protein complex;0.0027844622212092!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00278530394040298!GO:0043681;protein import into mitochondrion;0.00281942543907532!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00283346719068947!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00283346719068947!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00283346719068947!GO:0046489;phosphoinositide biosynthetic process;0.00283346719068947!GO:0009966;regulation of signal transduction;0.0029411964774228!GO:0004576;oligosaccharyl transferase activity;0.00299455923418348!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00307707484348361!GO:0006650;glycerophospholipid metabolic process;0.00308254321560978!GO:0030027;lamellipodium;0.00318030675188917!GO:0006509;membrane protein ectodomain proteolysis;0.00323378699809584!GO:0033619;membrane protein proteolysis;0.00323378699809584!GO:0046467;membrane lipid biosynthetic process;0.00331640457245334!GO:0005684;U2-dependent spliceosome;0.00340999206624903!GO:0017166;vinculin binding;0.00343166386492242!GO:0030118;clathrin coat;0.00343166386492242!GO:0043021;ribonucleoprotein binding;0.00355519364414013!GO:0008610;lipid biosynthetic process;0.00356282915883744!GO:0043488;regulation of mRNA stability;0.00382933176748649!GO:0043487;regulation of RNA stability;0.00382933176748649!GO:0031324;negative regulation of cellular metabolic process;0.00401000450962498!GO:0006612;protein targeting to membrane;0.00401693796099003!GO:0006740;NADPH regeneration;0.00409848318640317!GO:0006098;pentose-phosphate shunt;0.00409848318640317!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00411554435088103!GO:0006839;mitochondrial transport;0.00417130184866934!GO:0006626;protein targeting to mitochondrion;0.00443407372835141!GO:0006778;porphyrin metabolic process;0.00474863471994236!GO:0033013;tetrapyrrole metabolic process;0.00474863471994236!GO:0008139;nuclear localization sequence binding;0.00476073312993665!GO:0030176;integral to endoplasmic reticulum membrane;0.00480547739264323!GO:0022890;inorganic cation transmembrane transporter activity;0.00496037894821263!GO:0030695;GTPase regulator activity;0.00508777949385905!GO:0030658;transport vesicle membrane;0.00514692148492108!GO:0005819;spindle;0.0053174044901625!GO:0030041;actin filament polymerization;0.0053174044901625!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00559961460024595!GO:0048487;beta-tubulin binding;0.00572768866873692!GO:0005099;Ras GTPase activator activity;0.00575510777250466!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00578520868914729!GO:0015036;disulfide oxidoreductase activity;0.00593524102387269!GO:0007266;Rho protein signal transduction;0.00593524102387269!GO:0006979;response to oxidative stress;0.00596463741592124!GO:0005637;nuclear inner membrane;0.00602125725768263!GO:0005791;rough endoplasmic reticulum;0.00648428536145944!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00681072544143972!GO:0015002;heme-copper terminal oxidase activity;0.00681072544143972!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00681072544143972!GO:0004129;cytochrome-c oxidase activity;0.00681072544143972!GO:0030132;clathrin coat of coated pit;0.00705416715283122!GO:0030384;phosphoinositide metabolic process;0.00750949106725381!GO:0030659;cytoplasmic vesicle membrane;0.00783791829182476!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00786938950544344!GO:0051101;regulation of DNA binding;0.0082614082431137!GO:0040008;regulation of growth;0.00835838752812042!GO:0007050;cell cycle arrest;0.00867011684268664!GO:0016197;endosome transport;0.00909188552996319!GO:0042168;heme metabolic process;0.00909188552996319!GO:0003729;mRNA binding;0.00935005310405265!GO:0008186;RNA-dependent ATPase activity;0.00953589655606703!GO:0030660;Golgi-associated vesicle membrane;0.00978859533768441!GO:0001726;ruffle;0.00980452837042448!GO:0007006;mitochondrial membrane organization and biogenesis;0.00980452837042448!GO:0030308;negative regulation of cell growth;0.00993531219340731!GO:0030880;RNA polymerase complex;0.0105927345099602!GO:0046483;heterocycle metabolic process;0.0106019251385348!GO:0005874;microtubule;0.0107086451561054!GO:0006891;intra-Golgi vesicle-mediated transport;0.0107086451561054!GO:0006402;mRNA catabolic process;0.0107086451561054!GO:0051540;metal cluster binding;0.0108511542069528!GO:0051536;iron-sulfur cluster binding;0.0108511542069528!GO:0006643;membrane lipid metabolic process;0.0108775423355002!GO:0045792;negative regulation of cell size;0.011066735145692!GO:0051252;regulation of RNA metabolic process;0.0110946034169476!GO:0033673;negative regulation of kinase activity;0.0114546828603106!GO:0006469;negative regulation of protein kinase activity;0.0114546828603106!GO:0065007;biological regulation;0.0115299665999122!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0116651909634164!GO:0006779;porphyrin biosynthetic process;0.0121098797506599!GO:0033014;tetrapyrrole biosynthetic process;0.0121098797506599!GO:0004177;aminopeptidase activity;0.0124986579669042!GO:0016125;sterol metabolic process;0.0126739922993454!GO:0009892;negative regulation of metabolic process;0.0128698828982045!GO:0016363;nuclear matrix;0.0130992843046188!GO:0030119;AP-type membrane coat adaptor complex;0.0132630619426859!GO:0005869;dynactin complex;0.013316365967948!GO:0006644;phospholipid metabolic process;0.013423289636279!GO:0006497;protein amino acid lipidation;0.0138282823789277!GO:0008154;actin polymerization and/or depolymerization;0.0139634611858334!GO:0035258;steroid hormone receptor binding;0.0140009509884451!GO:0051348;negative regulation of transferase activity;0.0140033869278296!GO:0006383;transcription from RNA polymerase III promoter;0.0140416621204798!GO:0031072;heat shock protein binding;0.014230502596026!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0143162809315524!GO:0000059;protein import into nucleus, docking;0.0144254342142952!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0149365669129995!GO:0016301;kinase activity;0.0150780058704572!GO:0003756;protein disulfide isomerase activity;0.0150780058704572!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0150780058704572!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0151629417615275!GO:0051168;nuclear export;0.0158563290137632!GO:0000082;G1/S transition of mitotic cell cycle;0.0160844336921886!GO:0035035;histone acetyltransferase binding;0.0162144021138378!GO:0003684;damaged DNA binding;0.0162920712399908!GO:0005100;Rho GTPase activator activity;0.0164046164525734!GO:0004674;protein serine/threonine kinase activity;0.0164305667410495!GO:0006790;sulfur metabolic process;0.0167323415110647!GO:0045926;negative regulation of growth;0.0172984116484537!GO:0015631;tubulin binding;0.0174765067767435!GO:0051287;NAD binding;0.0177752605188003!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0178037419684863!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0181552694327384!GO:0006595;polyamine metabolic process;0.0184416163753215!GO:0031272;regulation of pseudopodium formation;0.0184416163753215!GO:0031269;pseudopodium formation;0.0184416163753215!GO:0031344;regulation of cell projection organization and biogenesis;0.0184416163753215!GO:0031268;pseudopodium organization and biogenesis;0.0184416163753215!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0184416163753215!GO:0031274;positive regulation of pseudopodium formation;0.0184416163753215!GO:0007021;tubulin folding;0.0185009106208715!GO:0006289;nucleotide-excision repair;0.0186817726307218!GO:0030131;clathrin adaptor complex;0.019019242096032!GO:0030145;manganese ion binding;0.0190503135780423!GO:0005657;replication fork;0.0192031417088862!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0197871646994044!GO:0008033;tRNA processing;0.0197871646994044!GO:0016272;prefoldin complex;0.0204360614624889!GO:0030663;COPI coated vesicle membrane;0.0206065069891137!GO:0030126;COPI vesicle coat;0.0206065069891137!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0206209423563252!GO:0050662;coenzyme binding;0.0207295328618338!GO:0048660;regulation of smooth muscle cell proliferation;0.0207758563199275!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0209347721002409!GO:0000428;DNA-directed RNA polymerase complex;0.0209347721002409!GO:0006506;GPI anchor biosynthetic process;0.0213370418130497!GO:0004004;ATP-dependent RNA helicase activity;0.0214640056988088!GO:0006739;NADP metabolic process;0.0220365957426733!GO:0006783;heme biosynthetic process;0.0220554161984447!GO:0000118;histone deacetylase complex;0.0221533580108099!GO:0003678;DNA helicase activity;0.0222306626324162!GO:0006401;RNA catabolic process;0.0225788222055043!GO:0006082;organic acid metabolic process;0.0227197250179282!GO:0006118;electron transport;0.0227197250179282!GO:0006458;'de novo' protein folding;0.0229612646717307!GO:0051084;'de novo' posttranslational protein folding;0.0229612646717307!GO:0030833;regulation of actin filament polymerization;0.0230466992762496!GO:0050790;regulation of catalytic activity;0.023166038009406!GO:0044433;cytoplasmic vesicle part;0.0237625200893784!GO:0006733;oxidoreduction coenzyme metabolic process;0.0238256650214873!GO:0022415;viral reproductive process;0.0242619251554713!GO:0030521;androgen receptor signaling pathway;0.0246288484399234!GO:0051539;4 iron, 4 sulfur cluster binding;0.0249369702405845!GO:0048500;signal recognition particle;0.0250549626060083!GO:0043433;negative regulation of transcription factor activity;0.0251162167829938!GO:0006261;DNA-dependent DNA replication;0.0253840068025243!GO:0030125;clathrin vesicle coat;0.0259745663128065!GO:0030665;clathrin coated vesicle membrane;0.0259745663128065!GO:0033559;unsaturated fatty acid metabolic process;0.0259745663128065!GO:0006636;unsaturated fatty acid biosynthetic process;0.0259745663128065!GO:0019752;carboxylic acid metabolic process;0.0260207880389702!GO:0031901;early endosome membrane;0.0261327184205111!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0262231774151169!GO:0031625;ubiquitin protein ligase binding;0.0263457753617063!GO:0030137;COPI-coated vesicle;0.0263470388202949!GO:0043284;biopolymer biosynthetic process;0.0266331018245947!GO:0042158;lipoprotein biosynthetic process;0.0270819948294777!GO:0032508;DNA duplex unwinding;0.0274867853111407!GO:0032392;DNA geometric change;0.0274867853111407!GO:0018193;peptidyl-amino acid modification;0.0276180579551576!GO:0000123;histone acetyltransferase complex;0.0277575420277126!GO:0000209;protein polyubiquitination;0.0279919613140261!GO:0007051;spindle organization and biogenesis;0.028133588553645!GO:0008094;DNA-dependent ATPase activity;0.0285073594734472!GO:0048518;positive regulation of biological process;0.0285835646446548!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0289574929500724!GO:0030134;ER to Golgi transport vesicle;0.0292892432062753!GO:0016860;intramolecular oxidoreductase activity;0.030483080163547!GO:0050178;phenylpyruvate tautomerase activity;0.0308051104531981!GO:0045045;secretory pathway;0.0308051104531981!GO:0008538;proteasome activator activity;0.0315558218277669!GO:0009100;glycoprotein metabolic process;0.0316940020749041!GO:0006505;GPI anchor metabolic process;0.0330793066081823!GO:0030100;regulation of endocytosis;0.0335555094852154!GO:0015035;protein disulfide oxidoreductase activity;0.0338069164263336!GO:0005975;carbohydrate metabolic process;0.0338448467977776!GO:0022408;negative regulation of cell-cell adhesion;0.0339369778977328!GO:0019887;protein kinase regulator activity;0.0344136247945514!GO:0000287;magnesium ion binding;0.0348538374382658!GO:0045941;positive regulation of transcription;0.035453854320221!GO:0030127;COPII vesicle coat;0.035901943938843!GO:0012507;ER to Golgi transport vesicle membrane;0.035901943938843!GO:0042157;lipoprotein metabolic process;0.035985165478103!GO:0000339;RNA cap binding;0.0363229623914205!GO:0031301;integral to organelle membrane;0.0363379517141921!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0365333912701917!GO:0006007;glucose catabolic process;0.037167346657477!GO:0009081;branched chain family amino acid metabolic process;0.0371839935675291!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0377521205144277!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0377521205144277!GO:0019207;kinase regulator activity;0.0377521205144277!GO:0051098;regulation of binding;0.0383492354861545!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0383724539518546!GO:0001953;negative regulation of cell-matrix adhesion;0.0390253484540568!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0392707648637596!GO:0016481;negative regulation of transcription;0.0398348458813483!GO:0006026;aminoglycan catabolic process;0.0406483089665452!GO:0006027;glycosaminoglycan catabolic process;0.0406483089665452!GO:0006268;DNA unwinding during replication;0.0409630045368842!GO:0005652;nuclear lamina;0.0413769214539123!GO:0006516;glycoprotein catabolic process;0.0414993392123339!GO:0000096;sulfur amino acid metabolic process;0.0416986707441558!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0418144063727012!GO:0010257;NADH dehydrogenase complex assembly;0.0418144063727012!GO:0033108;mitochondrial respiratory chain complex assembly;0.0418144063727012!GO:0005862;muscle thin filament tropomyosin;0.0431118115100827!GO:0012506;vesicle membrane;0.0431848789528006!GO:0007162;negative regulation of cell adhesion;0.0434394420144761!GO:0004192;cathepsin D activity;0.044110753186849!GO:0016408;C-acyltransferase activity;0.0444645377920927!GO:0005092;GDP-dissociation inhibitor activity;0.0444845178736916!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0444845178736916!GO:0016569;covalent chromatin modification;0.0450936325752738!GO:0008629;induction of apoptosis by intracellular signals;0.0453352906297436!GO:0009066;aspartate family amino acid metabolic process;0.0464768305937963!GO:0046822;regulation of nucleocytoplasmic transport;0.0469948175072277!GO:0043086;negative regulation of catalytic activity;0.0470812855166108!GO:0004448;isocitrate dehydrogenase activity;0.0473851531805719!GO:0043189;H4/H2A histone acetyltransferase complex;0.0475665719857939!GO:0007034;vacuolar transport;0.0479863945089823!GO:0004860;protein kinase inhibitor activity;0.048075386493394!GO:0004680;casein kinase activity;0.048679182388594!GO:0004518;nuclease activity;0.0489744042661178!GO:0048659;smooth muscle cell proliferation;0.0490213191166355!GO:0030433;ER-associated protein catabolic process;0.0490469443406946!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0490469443406946!GO:0006611;protein export from nucleus;0.0492977078716133!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0497708663744597!GO:0045047;protein targeting to ER;0.0497708663744597 | |||
|sample_id=11521 | |sample_id=11521 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=SOX{8,9,10}:1.94665030345;PAX6:1.93867597756;RXR{A,B,G}:1.84460209255;ESRRA:1.6088437943;PAX1,9:1.28557262254;PBX1:1.26255223229;TFAP4:1.25836641516;TFAP2{A,C}:1.25135207797;TLX1..3_NFIC{dimer}:1.24876727415;NR5A1,2:1.19904323453;XCPE1{core}:1.10331860998;AR:1.03792041964;TP53:0.979933717717;ALX1:0.947333985996;RBPJ:0.925766155033;ZNF423:0.878285493164;EBF1:0.864945149352;bHLH_family:0.823463366147;GATA6:0.818973972588;ETS1,2:0.80738489335;SMAD1..7,9:0.685003283494;NFATC1..3:0.664589195346;IKZF2:0.628077883415;PAX5:0.617648165769;ARID5B:0.613075212741;LEF1_TCF7_TCF7L1,2:0.603694401476;HIC1:0.596794805784;SPIB:0.551072472481;ZIC1..3:0.532075118415;CRX:0.530115053764;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519750822675;ZNF148:0.507770013566;RXRA_VDR{dimer}:0.505460982313;HNF4A_NR2F1,2:0.500465090317;REST:0.480461860574;TFAP2B:0.4657696827;GTF2A1,2:0.46393998273;FOXQ1:0.457301106855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453920662452;SOX17:0.449861518521;ZBTB6:0.428767324019;GZF1:0.421621935381;SOX5:0.40792965264;SP1:0.405494020342;MTE{core}:0.367902536205;SOX2:0.348714231019;POU6F1:0.343404116088;HES1:0.340668359663;SPZ1:0.33567807969;NKX2-2,8:0.327212058928;FOX{I1,J2}:0.324249315876;ZFP161:0.321234466139;RORA:0.318312280235;TFCP2:0.305512217615;FOXM1:0.237075404743;NANOG:0.234560633778;LMO2:0.21505889367;HAND1,2:0.194112173939;TFDP1:0.138421737889;LHX3,4:0.132132425659;FOX{D1,D2}:0.123185631211;HOX{A5,B5}:0.118130569158;ESR1:0.0950853350992;TEAD1:0.0943385695855;MED-1{core}:0.0711308757013;ELF1,2,4:0.070399649679;PATZ1:0.0625236479114;STAT2,4,6:0.0569133842523;PPARG:0.056537126606;GCM1,2:0.0532469537924;IKZF1:0.0503052807038;RREB1:0.0499443278695;MYOD1:0.0485898076713;SREBF1,2:0.0439744989726;EP300:0.0392940041501;ZNF238:0.0221506911176;TAL1_TCF{3,4,12}:0.0201711053597;SPI1:0.0154037222141;ONECUT1,2:0.00167704378507;NFKB1_REL_RELA:0.000521387648136;SRF:-0.0023187967437;NKX2-3_NKX2-5:-0.00746586812344;NR3C1:-0.0176593790175;MYB:-0.0277549496668;NFY{A,B,C}:-0.040882934527;UFEwm:-0.0416692400479;NFE2:-0.0524809363276;GFI1:-0.0673068690189;TBP:-0.0724718923738;NANOG{mouse}:-0.0977278145755;FOSL2:-0.100099150823;T:-0.10200987814;E2F1..5:-0.111873736976;NFE2L2:-0.11916729127;HNF1A:-0.122533264267;GTF2I:-0.123636477109;MEF2{A,B,C,D}:-0.12632885824;HBP1_HMGB_SSRP1_UBTF:-0.126787235569;MAZ:-0.132683151296;MZF1:-0.134523606014;PAX4:-0.139202462846;NHLH1,2:-0.15343650579;CDC5L:-0.194685459914;CUX2:-0.19828755241;PAX2:-0.209342277384;POU3F1..4:-0.229141490122;EN1,2:-0.229324501497;BACH2:-0.243103854829;FOS_FOS{B,L1}_JUN{B,D}:-0.247759520877;POU1F1:-0.251569971679;EGR1..3:-0.261157925025;PRRX1,2:-0.261934146181;HMX1:-0.281037070684;GATA4:-0.296658151442;TEF:-0.297217432769;PAX8:-0.320068347657;IRF1,2:-0.324823155257;NR6A1:-0.34175547089;GFI1B:-0.358263394476;SNAI1..3:-0.374220462302;MTF1:-0.379158506327;HLF:-0.38483062739;ZNF143:-0.385438647383;PRDM1:-0.388656919409;HOXA9_MEIS1:-0.39664393706;POU2F1..3:-0.408144436119;FOXL1:-0.411801797824;FOX{F1,F2,J1}:-0.432164253452;GLI1..3:-0.436440873975;PAX3,7:-0.436857818681;PITX1..3:-0.438785945286;TOPORS:-0.443685746819;RFX1:-0.477772169299;YY1:-0.537448755849;NRF1:-0.560096211267;ATF6:-0.564435045267;CREB1:-0.570947920772;KLF4:-0.580298959822;HOX{A6,A7,B6,B7}:-0.58260645491;ADNP_IRX_SIX_ZHX:-0.588993473311;NFE2L1:-0.598727258119;IRF7:-0.603046324627;FOXP3:-0.630485445171;MYFfamily:-0.651516740362;STAT1,3:-0.652622310517;JUN:-0.654114924;FOXA2:-0.661005911261;BREu{core}:-0.670937984348;NR1H4:-0.671763291217;HMGA1,2:-0.677087823005;ATF2:-0.694241454304;OCT4_SOX2{dimer}:-0.711557536351;POU5F1:-0.736112361307;TGIF1:-0.740382591715;RUNX1..3:-0.743346415676;XBP1:-0.748611843749;NKX3-2:-0.750659020861;ZEB1:-0.751240600878;DMAP1_NCOR{1,2}_SMARC:-0.76329293761;FOXO1,3,4:-0.775766561011;NFIX:-0.820703839584;CEBPA,B_DDIT3:-0.832261987438;PDX1:-0.870450971559;MAFB:-0.872999018447;AHR_ARNT_ARNT2:-0.87623435299;AIRE:-0.883152999345;FOXP1:-0.89372262109;RFX2..5_RFXANK_RFXAP:-0.898763040427;VSX1,2:-0.917468768468;EVI1:-0.925399124511;ATF4:-0.967278717415;FOXN1:-1.03075949907;STAT5{A,B}:-1.0879992656;ZNF384:-1.09388516703;ALX4:-1.11341945989;HOX{A4,D4}:-1.12870793678;NFIL3:-1.13942121099;NKX2-1,4:-1.15807403042;ZBTB16:-1.23006442762;BPTF:-1.26451715029;TBX4,5:-1.29412046485;CDX1,2,4:-1.31110477294;DBP:-1.31702666109;FOXD3:-1.34755235614;TLX2:-1.36965016997;ATF5_CREB3:-1.42775521313;MYBL2:-1.43873855148;ELK1,4_GABP{A,B1}:-1.44748804304;NKX6-1,2:-1.59530588802;HIF1A:-1.60676619399;NKX3-1:-1.61995460293;HSF1,2:-1.63331355366 | |top_motifs=SOX{8,9,10}:1.94665030345;PAX6:1.93867597756;RXR{A,B,G}:1.84460209255;ESRRA:1.6088437943;PAX1,9:1.28557262254;PBX1:1.26255223229;TFAP4:1.25836641516;TFAP2{A,C}:1.25135207797;TLX1..3_NFIC{dimer}:1.24876727415;NR5A1,2:1.19904323453;XCPE1{core}:1.10331860998;AR:1.03792041964;TP53:0.979933717717;ALX1:0.947333985996;RBPJ:0.925766155033;ZNF423:0.878285493164;EBF1:0.864945149352;bHLH_family:0.823463366147;GATA6:0.818973972588;ETS1,2:0.80738489335;SMAD1..7,9:0.685003283494;NFATC1..3:0.664589195346;IKZF2:0.628077883415;PAX5:0.617648165769;ARID5B:0.613075212741;LEF1_TCF7_TCF7L1,2:0.603694401476;HIC1:0.596794805784;SPIB:0.551072472481;ZIC1..3:0.532075118415;CRX:0.530115053764;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519750822675;ZNF148:0.507770013566;RXRA_VDR{dimer}:0.505460982313;HNF4A_NR2F1,2:0.500465090317;REST:0.480461860574;TFAP2B:0.4657696827;GTF2A1,2:0.46393998273;FOXQ1:0.457301106855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453920662452;SOX17:0.449861518521;ZBTB6:0.428767324019;GZF1:0.421621935381;SOX5:0.40792965264;SP1:0.405494020342;MTE{core}:0.367902536205;SOX2:0.348714231019;POU6F1:0.343404116088;HES1:0.340668359663;SPZ1:0.33567807969;NKX2-2,8:0.327212058928;FOX{I1,J2}:0.324249315876;ZFP161:0.321234466139;RORA:0.318312280235;TFCP2:0.305512217615;FOXM1:0.237075404743;NANOG:0.234560633778;LMO2:0.21505889367;HAND1,2:0.194112173939;TFDP1:0.138421737889;LHX3,4:0.132132425659;FOX{D1,D2}:0.123185631211;HOX{A5,B5}:0.118130569158;ESR1:0.0950853350992;TEAD1:0.0943385695855;MED-1{core}:0.0711308757013;ELF1,2,4:0.070399649679;PATZ1:0.0625236479114;STAT2,4,6:0.0569133842523;PPARG:0.056537126606;GCM1,2:0.0532469537924;IKZF1:0.0503052807038;RREB1:0.0499443278695;MYOD1:0.0485898076713;SREBF1,2:0.0439744989726;EP300:0.0392940041501;ZNF238:0.0221506911176;TAL1_TCF{3,4,12}:0.0201711053597;SPI1:0.0154037222141;ONECUT1,2:0.00167704378507;NFKB1_REL_RELA:0.000521387648136;SRF:-0.0023187967437;NKX2-3_NKX2-5:-0.00746586812344;NR3C1:-0.0176593790175;MYB:-0.0277549496668;NFY{A,B,C}:-0.040882934527;UFEwm:-0.0416692400479;NFE2:-0.0524809363276;GFI1:-0.0673068690189;TBP:-0.0724718923738;NANOG{mouse}:-0.0977278145755;FOSL2:-0.100099150823;T:-0.10200987814;E2F1..5:-0.111873736976;NFE2L2:-0.11916729127;HNF1A:-0.122533264267;GTF2I:-0.123636477109;MEF2{A,B,C,D}:-0.12632885824;HBP1_HMGB_SSRP1_UBTF:-0.126787235569;MAZ:-0.132683151296;MZF1:-0.134523606014;PAX4:-0.139202462846;NHLH1,2:-0.15343650579;CDC5L:-0.194685459914;CUX2:-0.19828755241;PAX2:-0.209342277384;POU3F1..4:-0.229141490122;EN1,2:-0.229324501497;BACH2:-0.243103854829;FOS_FOS{B,L1}_JUN{B,D}:-0.247759520877;POU1F1:-0.251569971679;EGR1..3:-0.261157925025;PRRX1,2:-0.261934146181;HMX1:-0.281037070684;GATA4:-0.296658151442;TEF:-0.297217432769;PAX8:-0.320068347657;IRF1,2:-0.324823155257;NR6A1:-0.34175547089;GFI1B:-0.358263394476;SNAI1..3:-0.374220462302;MTF1:-0.379158506327;HLF:-0.38483062739;ZNF143:-0.385438647383;PRDM1:-0.388656919409;HOXA9_MEIS1:-0.39664393706;POU2F1..3:-0.408144436119;FOXL1:-0.411801797824;FOX{F1,F2,J1}:-0.432164253452;GLI1..3:-0.436440873975;PAX3,7:-0.436857818681;PITX1..3:-0.438785945286;TOPORS:-0.443685746819;RFX1:-0.477772169299;YY1:-0.537448755849;NRF1:-0.560096211267;ATF6:-0.564435045267;CREB1:-0.570947920772;KLF4:-0.580298959822;HOX{A6,A7,B6,B7}:-0.58260645491;ADNP_IRX_SIX_ZHX:-0.588993473311;NFE2L1:-0.598727258119;IRF7:-0.603046324627;FOXP3:-0.630485445171;MYFfamily:-0.651516740362;STAT1,3:-0.652622310517;JUN:-0.654114924;FOXA2:-0.661005911261;BREu{core}:-0.670937984348;NR1H4:-0.671763291217;HMGA1,2:-0.677087823005;ATF2:-0.694241454304;OCT4_SOX2{dimer}:-0.711557536351;POU5F1:-0.736112361307;TGIF1:-0.740382591715;RUNX1..3:-0.743346415676;XBP1:-0.748611843749;NKX3-2:-0.750659020861;ZEB1:-0.751240600878;DMAP1_NCOR{1,2}_SMARC:-0.76329293761;FOXO1,3,4:-0.775766561011;NFIX:-0.820703839584;CEBPA,B_DDIT3:-0.832261987438;PDX1:-0.870450971559;MAFB:-0.872999018447;AHR_ARNT_ARNT2:-0.87623435299;AIRE:-0.883152999345;FOXP1:-0.89372262109;RFX2..5_RFXANK_RFXAP:-0.898763040427;VSX1,2:-0.917468768468;EVI1:-0.925399124511;ATF4:-0.967278717415;FOXN1:-1.03075949907;STAT5{A,B}:-1.0879992656;ZNF384:-1.09388516703;ALX4:-1.11341945989;HOX{A4,D4}:-1.12870793678;NFIL3:-1.13942121099;NKX2-1,4:-1.15807403042;ZBTB16:-1.23006442762;BPTF:-1.26451715029;TBX4,5:-1.29412046485;CDX1,2,4:-1.31110477294;DBP:-1.31702666109;FOXD3:-1.34755235614;TLX2:-1.36965016997;ATF5_CREB3:-1.42775521313;MYBL2:-1.43873855148;ELK1,4_GABP{A,B1}:-1.44748804304;NKX6-1,2:-1.59530588802;HIF1A:-1.60676619399;NKX3-1:-1.61995460293;HSF1,2:-1.63331355366 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11521-119H9;search_select_hide=table117:FF:11521-119H9 | |||
}} | }} | ||
Latest revision as of 18:06, 4 June 2020
| Name: | Hepatic Sinusoidal Endothelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12075 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12075
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12075
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.944 |
| 10 | 10 | 0.566 |
| 100 | 100 | 0.926 |
| 101 | 101 | 0.352 |
| 102 | 102 | 0.266 |
| 103 | 103 | 0.266 |
| 104 | 104 | 0.974 |
| 105 | 105 | 0.23 |
| 106 | 106 | 0.1 |
| 107 | 107 | 0.0134 |
| 108 | 108 | 0.249 |
| 109 | 109 | 0.302 |
| 11 | 11 | 0.0466 |
| 110 | 110 | 0.0296 |
| 111 | 111 | 0.992 |
| 112 | 112 | 0.516 |
| 113 | 113 | 0.528 |
| 114 | 114 | 0.433 |
| 115 | 115 | 0.602 |
| 116 | 116 | 0.627 |
| 117 | 117 | 0.817 |
| 118 | 118 | 0.465 |
| 119 | 119 | 0.0822 |
| 12 | 12 | 0.666 |
| 120 | 120 | 0.0384 |
| 121 | 121 | 0.929 |
| 122 | 122 | 0.681 |
| 123 | 123 | 0.397 |
| 124 | 124 | 0.501 |
| 125 | 125 | 0.763 |
| 126 | 126 | 0.613 |
| 127 | 127 | 0.506 |
| 128 | 128 | 0.0782 |
| 129 | 129 | 0.154 |
| 13 | 13 | 0.462 |
| 130 | 130 | 0.669 |
| 131 | 131 | 0.111 |
| 132 | 132 | 0.108 |
| 133 | 133 | 0.228 |
| 134 | 134 | 0.72 |
| 135 | 135 | 0.453 |
| 136 | 136 | 0.646 |
| 137 | 137 | 0.216 |
| 138 | 138 | 0.796 |
| 139 | 139 | 0.825 |
| 14 | 14 | 0.73 |
| 140 | 140 | 0.959 |
| 141 | 141 | 0.357 |
| 142 | 142 | 0.621 |
| 143 | 143 | 0.0976 |
| 144 | 144 | 0.431 |
| 145 | 145 | 0.117 |
| 146 | 146 | 0.203 |
| 147 | 147 | 0.536 |
| 148 | 148 | 0.19 |
| 149 | 149 | 0.0285 |
| 15 | 15 | 0.429 |
| 150 | 150 | 0.294 |
| 151 | 151 | 0.682 |
| 152 | 152 | 0.0758 |
| 153 | 153 | 0.075 |
| 154 | 154 | 0.165 |
| 155 | 155 | 0.743 |
| 156 | 156 | 0.529 |
| 157 | 157 | 0.524 |
| 158 | 158 | 0.869 |
| 159 | 159 | 0.8 |
| 16 | 16 | 0.485 |
| 160 | 160 | 0.00547 |
| 161 | 161 | 0.903 |
| 162 | 162 | 0.182 |
| 163 | 163 | 0.384 |
| 164 | 164 | 0.797 |
| 165 | 165 | 0.448 |
| 166 | 166 | 0.0942 |
| 167 | 167 | 0.0693 |
| 168 | 168 | 0.268 |
| 169 | 169 | 0.0326 |
| 17 | 17 | 0.298 |
| 18 | 18 | 0.911 |
| 19 | 19 | 0.0981 |
| 2 | 2 | 0.252 |
| 20 | 20 | 0.695 |
| 21 | 21 | 0.939 |
| 22 | 22 | 0.102 |
| 23 | 23 | 0.18 |
| 24 | 24 | 0.713 |
| 25 | 25 | 0.631 |
| 26 | 26 | 0.416 |
| 27 | 27 | 0.0477 |
| 28 | 28 | 0.506 |
| 29 | 29 | 0.767 |
| 3 | 3 | 0.687 |
| 30 | 30 | 0.357 |
| 31 | 31 | 0.489 |
| 32 | 32 | 0.291 |
| 33 | 33 | 0.253 |
| 34 | 34 | 0.0258 |
| 35 | 35 | 0.755 |
| 36 | 36 | 0.404 |
| 37 | 37 | 0.534 |
| 38 | 38 | 0.109 |
| 39 | 39 | 0.321 |
| 4 | 4 | 0.457 |
| 40 | 40 | 0.0176 |
| 41 | 41 | 0.0213 |
| 42 | 42 | 0.88 |
| 43 | 43 | 0.538 |
| 44 | 44 | 0.417 |
| 45 | 45 | 0.131 |
| 46 | 46 | 0.204 |
| 47 | 47 | 0.623 |
| 48 | 48 | 0.238 |
| 49 | 49 | 0.604 |
| 5 | 5 | 0.901 |
| 50 | 50 | 0.691 |
| 51 | 51 | 0.24 |
| 52 | 52 | 0.581 |
| 53 | 53 | 0.775 |
| 54 | 54 | 0.345 |
| 55 | 55 | 0.981 |
| 56 | 56 | 0.491 |
| 57 | 57 | 0.524 |
| 58 | 58 | 0.636 |
| 59 | 59 | 0.0323 |
| 6 | 6 | 0.382 |
| 60 | 60 | 0.336 |
| 61 | 61 | 0.879 |
| 62 | 62 | 0.668 |
| 63 | 63 | 0.516 |
| 64 | 64 | 0.193 |
| 65 | 65 | 0.0261 |
| 66 | 66 | 0.644 |
| 67 | 67 | 0.65 |
| 68 | 68 | 0.249 |
| 69 | 69 | 0.852 |
| 7 | 7 | 0.62 |
| 70 | 70 | 0.545 |
| 71 | 71 | 0.745 |
| 72 | 72 | 0.559 |
| 73 | 73 | 0.0513 |
| 74 | 74 | 0.184 |
| 75 | 75 | 0.486 |
| 76 | 76 | 0.329 |
| 77 | 77 | 0.0253 |
| 78 | 78 | 0.509 |
| 79 | 79 | 0.267 |
| 8 | 8 | 0.0195 |
| 80 | 80 | 0.409 |
| 81 | 81 | 0.768 |
| 82 | 82 | 0.146 |
| 83 | 83 | 0.661 |
| 84 | 84 | 0.138 |
| 85 | 85 | 0.111 |
| 86 | 86 | 0.936 |
| 87 | 87 | 0.347 |
| 88 | 88 | 0.745 |
| 89 | 89 | 0.267 |
| 9 | 9 | 0.164 |
| 90 | 90 | 0.157 |
| 91 | 91 | 0.271 |
| 92 | 92 | 0.249 |
| 93 | 93 | 0.597 |
| 94 | 94 | 0.717 |
| 95 | 95 | 0.177 |
| 96 | 96 | 0.319 |
| 97 | 97 | 0.329 |
| 98 | 98 | 0.525 |
| 99 | 99 | 0.0393 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12075
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000076 hepatic sinusoidal endothelial cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000215 (barrier cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000182 (hepatocyte)
0002262 (endothelial cell of sinusoid)
1000398 (endothelial cell of hepatic sinusoid)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0001007 (digestive system)
0000055 (vessel)
0001281 (hepatic sinusoid)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0000353 (parenchyma)
0003497 (abdomen blood vessel)
0003909 (sinusoid)
0005177 (trunk region element)
0002365 (exocrine gland)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0005172 (abdomen element)
0006925 (digestive gland)
0002049 (vasculature)
0002530 (gland)
0003835 (abdominal segment blood vessel)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005173 (abdominal segment element)
0004535 (cardiovascular system)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0004647 (liver lobule)
0002330 (exocrine system)
0004537 (blood vasculature)
0000916 (abdomen)
0002423 (hepatobiliary system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000076 (hepatic sinusoidal endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
CL:0000223 (endodermal cell)
