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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000926,UBERON:0000080,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0005103,UBERON:0000083,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0005291,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0003104,UBERON:0005172,UBERON:0000464,UBERON:0003567,UBERON:0009201,UBERON:0005256,UBERON:0003918,UBERON:0003838,UBERON:0003586,UBERON:0006598,UBERON:0003886,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0001231,UBERON:0004810,UBERON:0002532,UBERON:0006553,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0001285,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0001008,UBERON:0003074,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0003887,UBERON:0002319,UBERON:0002120,UBERON:0009142,UBERON:0003081,UBERON:0003064,UBERON:0001230,UBERON:0004875,UBERON:0003220,UBERON:0005749,UBERON:0006603,UBERON:0004876,UBERON:0004199,UBERON:0004208,UBERON:0005095,UBERON:0005721,UBERON:0005754,UBERON:0003060,UBERON:0004209,UBERON:0004198,UBERON:0007687,UBERON:0007297
|DRA_sample_Accession=CAGE@SAMD00005379
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000219,CL:0000183,CL:0000630,CL:0000004,CL:0000134,CL:0000255,CL:0000669,CL:0000650,CL:1000618,CL:1001318,CL:1000497,CL:0002518,CL:0002681,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:1000449,CL:1000746,CL:0002173,CL:1000500
|accession_numbers=CAGE;DRX008436;DRR009308;DRZ000733;DRZ002118;DRZ012083;DRZ013468
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0005172,UBERON:0003567,UBERON:0003838,UBERON:0003586,UBERON:0010317,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0004810,UBERON:0001285,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0002319
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0000650,CL:1000500,CL:1000618,CL:1001318,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:0002173
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000154
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.23!168.57!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.04!109.37!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.94!86.29!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.94!86.29!ELF3;;chr11:61520075..61520136,+!p1@C11orf9!1.82!133.95!C11orf9;;chr17:46703687..46703740,-!p1@HOXB9!1.81!63.21!HOXB9;;chr16:86600426..86600441,+!p1@FOXC2!1.73!126.43!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!1.68!46.66!HOXB6;;chr11:32457075..32457095,-!p1@WT1!1.58!36.62!WT1;;chr6:134210243..134210257,+!p1@TCF21!1.56!35.12!TCF21;;chr7:27205136..27205164,-!p1@HOXA9!1.55!34.62!HOXA9;;chr7:27196217..27196246,-!p2@HOXA7!1.54!33.61!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!1.49!29.60!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!1.49!29.60!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.60!HOXC5;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.60!LHX1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.09!HOXC9;;chr7:27153454..27153469,-!p2@HOXA3!1.40!24.08!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!1.39!23.58!HOXA11;;chr10:102505327..102505344,+!p1@PAX2!1.31!19.57!PAX2;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.06!HOXD11;;chr10:102505493..102505546,+!p2@PAX2!1.29!18.56!PAX2;;chr5:72744594..72744609,-!p1@FOXD1!1.28!80.77!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!1.28!18.06!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!1.26!376.27!AEBP1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.55!HOXA3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.19!15.55!GLIS1;;chr7:27213893..27213954,-!p1@HOXA10!1.19!14.55!HOXA10;;chr2:45236540..45236577,-!p1@SIX2!1.19!14.55!SIX2;;chr12:54379029..54379057,+!p2@HOXC10!1.18!14.05!HOXC10;;chr17:46688334..46688385,-!p1@HOXB7!1.17!20.07!HOXB7;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!1.15!131.44!GLIS2;;chr17:46622070..46622109,-!p1@HOXB2!1.14!28.60!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!1.12!16.05!BCL3;;chr7:44143978..44143989,+!p2@AEBP1!1.10!21.57!AEBP1;;chr7:27170359..27170381,-!p1@HOXA4!1.10!11.54!HOXA4;;chr2:176994408..176994492,+!p1@HOXD8!1.10!11.54!HOXD8;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.54!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.09!19.06!FOXD1;;chr14:21994337..21994442,-!p1@SALL2!1.08!30.60!SALL2;;chr19:49864746..49864780,-!p2@TEAD2!1.08!15.05!TEAD2;;chr16:51185172..51185197,-!p1@SALL1!1.08!11.04!SALL1;;chr10:77161533..77161546,-!p2@ZNF503!1.07!43.15!ZNF503;;chr1:209979467..209979494,-!p1@IRF6!1.07!12.04!IRF6;;chr15:96874145..96874166,+!p7@NR2F2!1.06!20.07!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!1.05!16.05!ZFP64;;chr10:77161650..77161661,-!p4@ZNF503!1.04!14.05!ZNF503;;chr12:3069037..3069119,+!p2@TEAD4!1.02!33.11!TEAD4;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.08!HIC1;;chr19:17356436..17356481,-!p3@NR2F6!1.02!16.56!NR2F6;;chr17:46622114..46622138,-!p4@HOXB2!1.02!14.55!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.04!HOXB2;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.53!SOX11;;chr20:30433396..30433414,-!p1@FOXS1!1.02!9.53!FOXS1;;chr7:27183263..27183284,-!p2@HOXA5!1.02!9.53!HOXA5;;chr2:239148671..239148686,-!p1@HES6!1.00!33.61!HES6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.00!9.03!HOXC5;;chr11:32457413..32457431,-!p2@WT1!0.98!8.53!WT1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.53!HOXB6;;chr15:96874012..96874042,+!p2@NR2F2!0.95!74.25!NR2F2;;chr19:49865646..49865718,-!p1@TEAD2!0.94!68.23!TEAD2;;chr6:34204672..34204692,+!p1@HMGA1!0.93!873.44!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!0.93!9.53!FOXF1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.92!85.79!TAX1BP3;;chr17:38465413..38465438,+!p5@RARA!0.92!12.04!RARA;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.63!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.61!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!0.90!19.57!HMGA2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!9.03!AEBP1;;chr17:46675420..46675465,-!p3@HOXB6!0.90!8.03!HOXB6;;chr17:46667594..46667619,-!p1@HOXB3!0.90!7.02!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.90!7.02!HOXB8;;chr7:27196196..27196210,-!p5@HOXA7!0.90!7.02!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.89!214.72!HMGA1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.89!33.61!GLIS2;;chr10:77161504..77161530,-!p1@ZNF503!0.88!93.31!ZNF503;;chr2:121493425..121493474,+!p1@GLI2!0.88!15.05!GLI2;;chr20:31350184..31350200,+!p1@DNMT3B!0.88!14.05!DNMT3B;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!9.03!DNMT3A;;chr2:176969097..176969109,+!p3@HOXD11!0.88!6.52!HOXD11;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.52!FOXC2;;chr11:63684602..63684664,-!p1@RCOR2!0.87!13.04!RCOR2;;chr2:121493492..121493537,+!p2@GLI2!0.87!11.04!GLI2;;chr20:6748325..6748352,+!p1@BMP2!0.87!9.53!BMP2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.85!464.06!TAX1BP3;;chr15:96874244..96874259,+!p5@NR2F2!0.85!15.55!NR2F2;;chr2:176969179..176969226,+!p2@HOXD11!0.85!6.02!HOXD11;;chr2:176972000..176972025,+!p4@HOXD11!0.85!6.02!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!0.85!6.02!HOXD10;;chr7:27219833..27219845,-!p7@HOXA10!0.85!6.02!HOXA10;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.02!FOXD1;;chr17:46622229..46622257,-!p6@HOXB2!0.84!7.02!HOXB2;;chr3:52001448..52001478,-!p2@PCBP4!0.83!85.79!PCBP4;;chr16:79633894..79633954,-!p3@MAF!0.83!11.54!MAF;;chr12:54772960..54773015,-!p3@ZNF385A!0.82!29.10!ZNF385A;;chr1:935467..935484,-!p1@HES4!0.82!26.59!HES4;;chr6:21593973..21593988,+!p1@SOX4!0.81!210.71!SOX4;;chr3:52001426..52001447,-!p3@PCBP4!0.81!16.56!PCBP4;;chr12:66218183..66218209,+!p4@HMGA2!0.81!11.04!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.81!9.53!CREB3L1;;chr15:80696703..80696754,+!p1@ARNT2!0.81!7.53!ARNT2;;chr16:86600458..86600461,+!p3@FOXC2!0.81!5.52!FOXC2;;chr17:46621146..46621180,-!p10@HOXB2!0.81!5.52!HOXB2;;chr2:176971685..176971700,+!p6@HOXD11!0.81!5.52!HOXD11;;chr2:45236579..45236596,-!p2@SIX2!0.81!5.52!SIX2;;chr16:29817841..29817865,+!p1@MAZ!0.80!122.91!MAZ;;chr6:21597765..21597779,+!p2@SOX4!0.80!46.16!SOX4;;chr14:61116183..61116208,-!p1@SIX1!0.80!21.57!SIX1;;chr12:80084167..80084197,-!p5@PAWR!0.80!13.04!PAWR;;chr15:96869255..96869291,+!p6@NR2F2!0.80!10.03!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.80!7.53!NR2F2;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.05!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.79!6.02!BNC1;;chr17:38498402..38498445,+!p3@RARA!0.78!19.57!RARA;;chr14:21994449..21994524,-!p2@SALL2!0.78!16.05!SALL2;;chr11:32456954..32456965,-!p4@WT1!0.78!5.02!WT1;;chr16:86601088..86601105,+!p5@FOXC2!0.78!5.02!FOXC2;;chr2:25475094..25475112,-!p3@DNMT3A!0.78!5.02!DNMT3A;;chr6:50786591..50786614,+!p1@TFAP2B!0.78!5.02!TFAP2B;;chr16:79634624..79634642,-!p1@MAF!0.77!21.07!MAF;;chr1:151032922..151032951,+!p2@MLLT11!0.77!8.53!MLLT11;;chr5:178368186..178368238,+!p1@ZNF454!0.76!9.03!ZNF454;;chr6:41514078..41514158,+!p1@FOXP4!0.75!46.16!FOXP4;;chr7:28448965..28448994,+!p2@CREB5!0.75!17.56!CREB5;;chr19:56092195..56092248,-!p1@ZNF579!0.74!53.18!ZNF579;;chr7:6655225..6655279,+!p1@ENST00000457543!0.74!7.02!ZNF853;;chr7:27153428..27153440,-!p3@HOXA3!0.74!4.52!HOXA3;;chr10:102505954..102505973,+!p3@PAX2!0.74!4.52!PAX2;;chr12:54394309..54394336,+!p2@HOXC9!0.74!4.52!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.52!HOXC8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.74!4.52!POU3F3;;chr2:177001290..177001315,+!p1@HOXD3!0.74!4.52!HOXD3;;chr3:111314186..111314204,-!p1@ZBED2!0.74!4.52!ZBED2;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.52!HOPX;;chr5:92919100..92919135,+!p3@NR2F1!0.73!5.52!NR2F1;;chr16:29817789..29817838,+!p2@MAZ!0.72!64.22!MAZ;;chr1:151032860..151032918,+!p1@MLLT11!0.72!57.19!MLLT11;;chr17:38498594..38498661,+!p2@RARA!0.72!15.55!RARA;;chr2:28615716..28615733,+!p1@FOSL2!0.71!220.24!FOSL2;;chr19:19303731..19303783,+!p1@RFXANK!0.71!111.38!RFXANK;;chr9:35732647..35732678,+!p2@CREB3!0.71!25.59!CREB3;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.19!SREBF2;;chr12:54447599..54447630,+!p3@HOXC4!0.70!5.02!HOXC4;;chr10:102495136..102495146,+!p8@PAX2!0.70!4.01!PAX2;;chr10:119303078..119303169,+!p2@EMX2!0.70!4.01!EMX2;;chr10:134599649..134599653,-!p1@NKX6-2!0.70!4.01!NKX6-2;;chr12:54394059..54394088,+!p3@HOXC9!0.70!4.01!HOXC9;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.01!SIM2;;chr5:2751762..2751784,-!p1@IRX2!0.70!4.01!IRX2;;chr6:35464729..35464738,-!p3@TEAD3!0.70!4.01!TEAD3;;chr7:27219754..27219759,-!p16@HOXA10!0.70!4.01!HOXA10;;chr7:27219849..27219867,-!p6@HOXA10!0.70!4.01!HOXA10;;chr2:96012353..96012378,+!p4@KCNIP3!0.70!4.01!KCNIP3;;chr2:96012397..96012417,+!p3@KCNIP3!0.70!4.01!KCNIP3;;chr16:86612320..86612394,+!p1@FOXL1!0.70!4.01!FOXL1;;chr17:36104873..36104903,-!p3@HNF1B!0.70!4.01!HNF1B;;chr17:46622175..46622186,-!p12@HOXB2!0.70!4.01!HOXB2;;chr17:46667561..46667572,-!p4@HOXB3!0.70!4.01!HOXB3;;chr17:46692457..46692484,-!p2@HOXB8!0.70!4.01!HOXB8;;chr15:96873984..96873999,+!p3@NR2F2!0.69!32.61!NR2F2;;chr16:8962853..8962878,-!p1@CARHSP1!0.68!255.86!CARHSP1;;chr12:50479109..50479146,+!p2@SMARCD1!0.68!73.75!SMARCD1;;chr20:306489..306564,+!p1@SOX12!0.68!47.16!SOX12;;chr12:80084137..80084165,-!p10@PAWR!0.68!5.02!PAWR;;chr1:935519..935532,-!p4@HES4!0.68!4.52!HES4;;chr15:96869222..96869251,+!p18@NR2F2!0.68!4.52!NR2F2;;chr19:17356697..17356762,-!p1@NR2F6!0.67!58.70!NR2F6;;chr7:150974206..150974255,-!p1@SMARCD3!0.67!26.09!SMARCD3;;chr8:128749984..128750033,+!p4@MYC!0.67!15.05!MYC;;chr17:7492684..7492778,-!p2@SOX15!0.67!8.53!SOX15;;chr12:80084279..80084293,-!p8@PAWR!0.67!6.52!PAWR;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.02!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.66!40.64!NFKBIE;;chr19:45504688..45504782,+!p1@RELB!0.66!25.08!RELB;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.08!MYBL2;;chr7:150076406..150076456,+!p1@ZNF775!0.66!19.06!ZNF775;;chr3:71630980..71631110,-!p3@FOXP1!0.66!14.05!FOXP1;;chr1:41827095..41827155,+!p1@FOXO6!0.66!5.02!FOXO6;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.52!FOXD1;;chr7:27183291..27183324,-!p1@HOXA5!0.65!3.51!HOXA5;;chr4:57522513..57522548,-!p4@HOPX!0.65!3.51!HOPX;;chr10:119302508..119302559,+!p5@EMX2!0.65!3.51!EMX2;;chr10:119302645..119302712,+!p3@EMX2!0.65!3.51!EMX2;;chr16:51185573..51185593,-!p3@SALL1!0.65!3.51!SALL1;;chr17:4670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|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.23!168.57!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.04!109.37!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.94!86.29!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.94!86.29!ELF3;;chr11:61520075..61520136,+!p1@C11orf9!1.82!133.95!C11orf9;;chr17:46703687..46703740,-!p1@HOXB9!1.81!63.21!HOXB9;;chr16:86600426..86600441,+!p1@FOXC2!1.73!126.43!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!1.68!46.66!HOXB6;;chr11:32457075..32457095,-!p1@WT1!1.58!36.62!WT1;;chr6:134210243..134210257,+!p1@TCF21!1.56!35.12!TCF21;;chr7:27205136..27205164,-!p1@HOXA9!1.55!34.62!HOXA9;;chr7:27196217..27196246,-!p2@HOXA7!1.54!33.61!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!1.49!29.60!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!1.49!29.60!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.60!HOXC5;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.60!LHX1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.09!HOXC9;;chr7:27153454..27153469,-!p2@HOXA3!1.40!24.08!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!1.39!23.58!HOXA11;;chr10:102505327..102505344,+!p1@PAX2!1.31!19.57!PAX2;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.06!HOXD11;;chr10:102505493..102505546,+!p2@PAX2!1.29!18.56!PAX2;;chr5:72744594..72744609,-!p1@FOXD1!1.28!80.77!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!1.28!18.06!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!1.26!376.27!AEBP1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.55!HOXA3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.19!15.55!GLIS1;;chr7:27213893..27213954,-!p1@HOXA10!1.19!14.55!HOXA10;;chr2:45236540..45236577,-!p1@SIX2!1.19!14.55!SIX2;;chr12:54379029..54379057,+!p2@HOXC10!1.18!14.05!HOXC10;;chr17:46688334..46688385,-!p1@HOXB7!1.17!20.07!HOXB7;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!1.15!131.44!GLIS2;;chr17:46622070..46622109,-!p1@HOXB2!1.14!28.60!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!1.12!16.05!BCL3;;chr7:44143978..44143989,+!p2@AEBP1!1.10!21.57!AEBP1;;chr7:27170359..27170381,-!p1@HOXA4!1.10!11.54!HOXA4;;chr2:176994408..176994492,+!p1@HOXD8!1.10!11.54!HOXD8;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.54!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.09!19.06!FOXD1;;chr14:21994337..21994442,-!p1@SALL2!1.08!30.60!SALL2;;chr19:49864746..49864780,-!p2@TEAD2!1.08!15.05!TEAD2;;chr16:51185172..51185197,-!p1@SALL1!1.08!11.04!SALL1;;chr10:77161533..77161546,-!p2@ZNF503!1.07!43.15!ZNF503;;chr1:209979467..209979494,-!p1@IRF6!1.07!12.04!IRF6;;chr15:96874145..96874166,+!p7@NR2F2!1.06!20.07!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!1.05!16.05!ZFP64;;chr10:77161650..77161661,-!p4@ZNF503!1.04!14.05!ZNF503;;chr12:3069037..3069119,+!p2@TEAD4!1.02!33.11!TEAD4;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.08!HIC1;;chr19:17356436..17356481,-!p3@NR2F6!1.02!16.56!NR2F6;;chr17:46622114..46622138,-!p4@HOXB2!1.02!14.55!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.04!HOXB2;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.53!SOX11;;chr20:30433396..30433414,-!p1@FOXS1!1.02!9.53!FOXS1;;chr7:27183263..27183284,-!p2@HOXA5!1.02!9.53!HOXA5;;chr2:239148671..239148686,-!p1@HES6!1.00!33.61!HES6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.00!9.03!HOXC5;;chr11:32457413..32457431,-!p2@WT1!0.98!8.53!WT1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.53!HOXB6;;chr15:96874012..96874042,+!p2@NR2F2!0.95!74.25!NR2F2;;chr19:49865646..49865718,-!p1@TEAD2!0.94!68.23!TEAD2;;chr6:34204672..34204692,+!p1@HMGA1!0.93!873.44!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!0.93!9.53!FOXF1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.92!85.79!TAX1BP3;;chr17:38465413..38465438,+!p5@RARA!0.92!12.04!RARA;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.63!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.61!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!0.90!19.57!HMGA2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!9.03!AEBP1;;chr17:46675420..46675465,-!p3@HOXB6!0.90!8.03!HOXB6;;chr17:46667594..46667619,-!p1@HOXB3!0.90!7.02!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.90!7.02!HOXB8;;chr7:27196196..27196210,-!p5@HOXA7!0.90!7.02!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.89!214.72!HMGA1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.89!33.61!GLIS2;;chr10:77161504..77161530,-!p1@ZNF503!0.88!93.31!ZNF503;;chr2:121493425..121493474,+!p1@GLI2!0.88!15.05!GLI2;;chr20:31350184..31350200,+!p1@DNMT3B!0.88!14.05!DNMT3B;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!9.03!DNMT3A;;chr2:176969097..176969109,+!p3@HOXD11!0.88!6.52!HOXD11;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.52!FOXC2;;chr11:63684602..63684664,-!p1@RCOR2!0.87!13.04!RCOR2;;chr2:121493492..121493537,+!p2@GLI2!0.87!11.04!GLI2;;chr20:6748325..6748352,+!p1@BMP2!0.87!9.53!BMP2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.85!464.06!TAX1BP3;;chr15:96874244..96874259,+!p5@NR2F2!0.85!15.55!NR2F2;;chr2:176969179..176969226,+!p2@HOXD11!0.85!6.02!HOXD11;;chr2:176972000..176972025,+!p4@HOXD11!0.85!6.02!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!0.85!6.02!HOXD10;;chr7:27219833..27219845,-!p7@HOXA10!0.85!6.02!HOXA10;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.02!FOXD1;;chr17:46622229..46622257,-!p6@HOXB2!0.84!7.02!HOXB2;;chr3:52001448..52001478,-!p2@PCBP4!0.83!85.79!PCBP4;;chr16:79633894..79633954,-!p3@MAF!0.83!11.54!MAF;;chr12:54772960..54773015,-!p3@ZNF385A!0.82!29.10!ZNF385A;;chr1:935467..935484,-!p1@HES4!0.82!26.59!HES4;;chr6:21593973..21593988,+!p1@SOX4!0.81!210.71!SOX4;;chr3:52001426..52001447,-!p3@PCBP4!0.81!16.56!PCBP4;;chr12:66218183..66218209,+!p4@HMGA2!0.81!11.04!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.81!9.53!CREB3L1;;chr15:80696703..80696754,+!p1@ARNT2!0.81!7.53!ARNT2;;chr16:86600458..86600461,+!p3@FOXC2!0.81!5.52!FOXC2;;chr17:46621146..46621180,-!p10@HOXB2!0.81!5.52!HOXB2;;chr2:176971685..176971700,+!p6@HOXD11!0.81!5.52!HOXD11;;chr2:45236579..45236596,-!p2@SIX2!0.81!5.52!SIX2;;chr16:29817841..29817865,+!p1@MAZ!0.80!122.91!MAZ;;chr6:21597765..21597779,+!p2@SOX4!0.80!46.16!SOX4;;chr14:61116183..61116208,-!p1@SIX1!0.80!21.57!SIX1;;chr12:80084167..80084197,-!p5@PAWR!0.80!13.04!PAWR;;chr15:96869255..96869291,+!p6@NR2F2!0.80!10.03!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.80!7.53!NR2F2;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.05!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.79!6.02!BNC1;;chr17:38498402..38498445,+!p3@RARA!0.78!19.57!RARA;;chr14:21994449..21994524,-!p2@SALL2!0.78!16.05!SALL2;;chr11:32456954..32456965,-!p4@WT1!0.78!5.02!WT1;;chr16:86601088..86601105,+!p5@FOXC2!0.78!5.02!FOXC2;;chr2:25475094..25475112,-!p3@DNMT3A!0.78!5.02!DNMT3A;;chr6:50786591..50786614,+!p1@TFAP2B!0.78!5.02!TFAP2B;;chr16:79634624..79634642,-!p1@MAF!0.77!21.07!MAF;;chr1:151032922..151032951,+!p2@MLLT11!0.77!8.53!MLLT11;;chr5:178368186..178368238,+!p1@ZNF454!0.76!9.03!ZNF454;;chr6:41514078..41514158,+!p1@FOXP4!0.75!46.16!FOXP4;;chr7:28448965..28448994,+!p2@CREB5!0.75!17.56!CREB5;;chr19:56092195..56092248,-!p1@ZNF579!0.74!53.18!ZNF579;;chr7:6655225..6655279,+!p1@ENST00000457543!0.74!7.02!ZNF853;;chr7:27153428..27153440,-!p3@HOXA3!0.74!4.52!HOXA3;;chr10:102505954..102505973,+!p3@PAX2!0.74!4.52!PAX2;;chr12:54394309..54394336,+!p2@HOXC9!0.74!4.52!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.52!HOXC8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.74!4.52!POU3F3;;chr2:177001290..177001315,+!p1@HOXD3!0.74!4.52!HOXD3;;chr3:111314186..111314204,-!p1@ZBED2!0.74!4.52!ZBED2;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.52!HOPX;;chr5:92919100..92919135,+!p3@NR2F1!0.73!5.52!NR2F1;;chr16:29817789..29817838,+!p2@MAZ!0.72!64.22!MAZ;;chr1:151032860..151032918,+!p1@MLLT11!0.72!57.19!MLLT11;;chr17:38498594..38498661,+!p2@RARA!0.72!15.55!RARA;;chr2:28615716..28615733,+!p1@FOSL2!0.71!220.24!FOSL2;;chr19:19303731..19303783,+!p1@RFXANK!0.71!111.38!RFXANK;;chr9:35732647..35732678,+!p2@CREB3!0.71!25.59!CREB3;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.19!SREBF2;;chr12:54447599..54447630,+!p3@HOXC4!0.70!5.02!HOXC4;;chr10:102495136..102495146,+!p8@PAX2!0.70!4.01!PAX2;;chr10:119303078..119303169,+!p2@EMX2!0.70!4.01!EMX2;;chr10:134599649..134599653,-!p1@NKX6-2!0.70!4.01!NKX6-2;;chr12:54394059..54394088,+!p3@HOXC9!0.70!4.01!HOXC9;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.01!SIM2;;chr5:2751762..2751784,-!p1@IRX2!0.70!4.01!IRX2;;chr6:35464729..35464738,-!p3@TEAD3!0.70!4.01!TEAD3;;chr7:27219754..27219759,-!p16@HOXA10!0.70!4.01!HOXA10;;chr7:27219849..27219867,-!p6@HOXA10!0.70!4.01!HOXA10;;chr2:96012353..96012378,+!p4@KCNIP3!0.70!4.01!KCNIP3;;chr2:96012397..96012417,+!p3@KCNIP3!0.70!4.01!KCNIP3;;chr16:86612320..86612394,+!p1@FOXL1!0.70!4.01!FOXL1;;chr17:36104873..36104903,-!p3@HNF1B!0.70!4.01!HNF1B;;chr17:46622175..46622186,-!p12@HOXB2!0.70!4.01!HOXB2;;chr17:46667561..46667572,-!p4@HOXB3!0.70!4.01!HOXB3;;chr17:46692457..46692484,-!p2@HOXB8!0.70!4.01!HOXB8;;chr15:96873984..96873999,+!p3@NR2F2!0.69!32.61!NR2F2;;chr16:8962853..8962878,-!p1@CARHSP1!0.68!255.86!CARHSP1;;chr12:50479109..50479146,+!p2@SMARCD1!0.68!73.75!SMARCD1;;chr20:306489..306564,+!p1@SOX12!0.68!47.16!SOX12;;chr12:80084137..80084165,-!p10@PAWR!0.68!5.02!PAWR;;chr1:935519..935532,-!p4@HES4!0.68!4.52!HES4;;chr15:96869222..96869251,+!p18@NR2F2!0.68!4.52!NR2F2;;chr19:17356697..17356762,-!p1@NR2F6!0.67!58.70!NR2F6;;chr7:150974206..150974255,-!p1@SMARCD3!0.67!26.09!SMARCD3;;chr8:128749984..128750033,+!p4@MYC!0.67!15.05!MYC;;chr17:7492684..7492778,-!p2@SOX15!0.67!8.53!SOX15;;chr12:80084279..80084293,-!p8@PAWR!0.67!6.52!PAWR;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.02!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.66!40.64!NFKBIE;;chr19:45504688..45504782,+!p1@RELB!0.66!25.08!RELB;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.08!MYBL2;;chr7:150076406..150076456,+!p1@ZNF775!0.66!19.06!ZNF775;;chr3:71630980..71631110,-!p3@FOXP1!0.66!14.05!FOXP1;;chr1:41827095..41827155,+!p1@FOXO6!0.66!5.02!FOXO6;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.52!FOXD1;;chr7:27183291..27183324,-!p1@HOXA5!0.65!3.51!HOXA5;;chr4:57522513..57522548,-!p4@HOPX!0.65!3.51!HOPX;;chr10:119302508..119302559,+!p5@EMX2!0.65!3.51!EMX2;;chr10:119302645..119302712,+!p3@EMX2!0.65!3.51!EMX2;;chr16:51185573..51185593,-!p3@SALL1!0.65!3.51!SALL1;;chr17:4670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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1001318;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003891;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg38.nobarcode.ctss.bed.gz
|id=FF:11679-122H5
|id=FF:11679-122H5
|is_a=EFO:0002091;;FF:0000154
|is_a=EFO:0002091;;FF:0000154
|is_obsolete=
|is_obsolete=
|library_id=CNhs12121
|library_id_phase_based=2:CNhs12121
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11679
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11679
|name=Renal Mesangial Cells, donor3
|name=Renal Mesangial Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12121,LSID839,release011,COMPLETED
|profile_hcage=CNhs12121,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=122
|rna_box=122
|rna_catalog_number=SC4205
|rna_catalog_number=SC4205
Line 59: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=lot:1063
|sample_cell_catalog=lot:1063
|sample_cell_line=
|sample_cell_line=
Line 80: Line 101:
|top_motifs=XCPE1{core}:2.54141739629;ZNF423:2.17322068227;GTF2A1,2:2.11099482676;ESR1:2.08515769507;RXRA_VDR{dimer}:2.04584532259;EBF1:2.02114971025;TFCP2:1.88772099877;SP1:1.83857877654;GLI1..3:1.83577195988;ZNF148:1.78281481887;RXR{A,B,G}:1.7822203822;TFAP2{A,C}:1.74757401781;GZF1:1.40045575682;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37192644721;HNF1A:1.3026949568;RREB1:1.21288489925;ZIC1..3:1.19824636695;PPARG:1.18502825309;HIC1:1.14742235393;PBX1:1.12836048786;ZBTB6:1.04011089298;TFAP2B:1.00191067459;LHX3,4:0.967024912507;POU2F1..3:0.950793972117;LMO2:0.917495743232;PATZ1:0.89840736418;EP300:0.894441230372;TEAD1:0.889206410932;NR5A1,2:0.866878876038;bHLH_family:0.857442999484;MYOD1:0.820628125901;PAX5:0.80652307182;TLX1..3_NFIC{dimer}:0.798074576784;HOX{A5,B5}:0.796981443596;SPZ1:0.784602638335;MTF1:0.781140825986;TAL1_TCF{3,4,12}:0.773581219803;SNAI1..3:0.711730843466;ZEB1:0.685050934337;GTF2I:0.639668190696;TFAP4:0.609406244557;NKX2-3_NKX2-5:0.603475605084;ESRRA:0.58803055618;SRF:0.585963341203;ONECUT1,2:0.580751733087;TP53:0.55582389042;NR6A1:0.534735088001;IKZF1:0.525819988642;HAND1,2:0.517885441829;MAZ:0.447254143012;LEF1_TCF7_TCF7L1,2:0.447143290727;REST:0.43223425619;HES1:0.419491175195;HNF4A_NR2F1,2:0.393728685155;ADNP_IRX_SIX_ZHX:0.335978258377;GFI1B:0.320519561006;SOX{8,9,10}:0.315787479404;TBP:0.305666413462;TOPORS:0.268001368712;JUN:0.215726692502;PAX1,9:0.214546239327;SMAD1..7,9:0.196685657712;GFI1:0.184351952449;SOX17:0.181618770551;EGR1..3:0.133965892545;FOXL1:0.124744459998;HMX1:0.121783519329;UFEwm:0.117356587328;NR3C1:0.110458655473;SOX2:0.0979431513303;NFE2L1:0.0885271953735;KLF4:0.076337419457;TBX4,5:0.0724971459976;BACH2:0.0660430150226;NR1H4:0.0639040439572;ZNF238:0.055516209944;NFKB1_REL_RELA:0.0531665649214;FOSL2:0.0521729698286;STAT5{A,B}:0.0345904101544;FOS_FOS{B,L1}_JUN{B,D}:0.00587928279343;MED-1{core}:-0.00754095273371;NANOG:-0.0272373953366;MEF2{A,B,C,D}:-0.0432385614644;MZF1:-0.044911966097;NFE2:-0.0725875343296;AR:-0.0791372793558;GCM1,2:-0.0837102429497;NHLH1,2:-0.108956778827;STAT2,4,6:-0.11043866755;RFX1:-0.110842347277;ZNF384:-0.120375910569;FOXM1:-0.126638363013;NFY{A,B,C}:-0.130320368094;MTE{core}:-0.169783786413;ZNF143:-0.170627186603;FOXQ1:-0.193901229407;POU5F1:-0.201761948095;ALX4:-0.203803983073;NANOG{mouse}:-0.234262891742;RUNX1..3:-0.23904853799;HOX{A6,A7,B6,B7}:-0.258015206883;PRRX1,2:-0.273619452104;MYBL2:-0.315829294255;PAX8:-0.332460475738;NFE2L2:-0.351635759199;RORA:-0.363626091443;POU6F1:-0.372938284531;HLF:-0.389355932887;CUX2:-0.389813428719;ATF2:-0.407957514297;GATA6:-0.42533562815;ZFP161:-0.481133311361;E2F1..5:-0.490521200397;VSX1,2:-0.499877634439;ETS1,2:-0.507904485636;XBP1:-0.507910612198;EN1,2:-0.514871785451;FOX{F1,F2,J1}:-0.537156253762;CRX:-0.564584298676;CEBPA,B_DDIT3:-0.587968002195;ARID5B:-0.61682645733;ATF6:-0.636747472804;SPIB:-0.649010355715;POU3F1..4:-0.672446500795;DBP:-0.675936256601;PRDM1:-0.699634868605;TFDP1:-0.706551003036;PITX1..3:-0.716786388385;CDC5L:-0.717656757242;YY1:-0.721780418448;SOX5:-0.756675661511;BREu{core}:-0.802142596092;NFIL3:-0.814508702618;MYFfamily:-0.817538203088;HOXA9_MEIS1:-0.819202559268;TEF:-0.820536821127;SPI1:-0.8267213153;AIRE:-0.830859530332;NFATC1..3:-0.841395042748;SREBF1,2:-0.853154063308;PAX2:-0.858295030746;ALX1:-0.866554354529;NKX6-1,2:-0.892805996399;FOX{D1,D2}:-0.896245093657;HOX{A4,D4}:-0.915099853824;CDX1,2,4:-0.915539098954;POU1F1:-0.92564204755;OCT4_SOX2{dimer}:-0.931145859692;RFX2..5_RFXANK_RFXAP:-0.936850800263;MAFB:-0.973247417523;PAX6:-1.0252255085;NKX3-2:-1.02552334511;STAT1,3:-1.04053531965;HSF1,2:-1.04952249131;DMAP1_NCOR{1,2}_SMARC:-1.06535451734;AHR_ARNT_ARNT2:-1.07437288352;T:-1.08600803614;IRF1,2:-1.09141497782;CREB1:-1.10208037395;FOXP1:-1.10305130651;EVI1:-1.12285076857;NRF1:-1.12773883187;ELK1,4_GABP{A,B1}:-1.1308223522;RBPJ:-1.13707763737;HBP1_HMGB_SSRP1_UBTF:-1.13709593543;IRF7:-1.18627331061;NFIX:-1.20801189752;ATF4:-1.26248560598;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.3061167725;NKX3-1:-1.34115939211;FOXP3:-1.34990864611;PAX3,7:-1.35042792016;MYB:-1.35742797597;FOXD3:-1.36431826805;TGIF1:-1.36995360567;NKX2-1,4:-1.37299039888;GATA4:-1.3898545086;PDX1:-1.40665633674;ATF5_CREB3:-1.4800178065;NKX2-2,8:-1.480462153;FOXA2:-1.50781447068;HIF1A:-1.50896503711;ELF1,2,4:-1.57048960025;TLX2:-1.64907963111;FOX{I1,J2}:-1.69628000927;ZBTB16:-1.83262833119;PAX4:-1.83850272609;FOXO1,3,4:-1.90809987551;BPTF:-1.9923451752;IKZF2:-2.00070354192;FOXN1:-2.10076690576;HMGA1,2:-2.29680068618
|top_motifs=XCPE1{core}:2.54141739629;ZNF423:2.17322068227;GTF2A1,2:2.11099482676;ESR1:2.08515769507;RXRA_VDR{dimer}:2.04584532259;EBF1:2.02114971025;TFCP2:1.88772099877;SP1:1.83857877654;GLI1..3:1.83577195988;ZNF148:1.78281481887;RXR{A,B,G}:1.7822203822;TFAP2{A,C}:1.74757401781;GZF1:1.40045575682;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37192644721;HNF1A:1.3026949568;RREB1:1.21288489925;ZIC1..3:1.19824636695;PPARG:1.18502825309;HIC1:1.14742235393;PBX1:1.12836048786;ZBTB6:1.04011089298;TFAP2B:1.00191067459;LHX3,4:0.967024912507;POU2F1..3:0.950793972117;LMO2:0.917495743232;PATZ1:0.89840736418;EP300:0.894441230372;TEAD1:0.889206410932;NR5A1,2:0.866878876038;bHLH_family:0.857442999484;MYOD1:0.820628125901;PAX5:0.80652307182;TLX1..3_NFIC{dimer}:0.798074576784;HOX{A5,B5}:0.796981443596;SPZ1:0.784602638335;MTF1:0.781140825986;TAL1_TCF{3,4,12}:0.773581219803;SNAI1..3:0.711730843466;ZEB1:0.685050934337;GTF2I:0.639668190696;TFAP4:0.609406244557;NKX2-3_NKX2-5:0.603475605084;ESRRA:0.58803055618;SRF:0.585963341203;ONECUT1,2:0.580751733087;TP53:0.55582389042;NR6A1:0.534735088001;IKZF1:0.525819988642;HAND1,2:0.517885441829;MAZ:0.447254143012;LEF1_TCF7_TCF7L1,2:0.447143290727;REST:0.43223425619;HES1:0.419491175195;HNF4A_NR2F1,2:0.393728685155;ADNP_IRX_SIX_ZHX:0.335978258377;GFI1B:0.320519561006;SOX{8,9,10}:0.315787479404;TBP:0.305666413462;TOPORS:0.268001368712;JUN:0.215726692502;PAX1,9:0.214546239327;SMAD1..7,9:0.196685657712;GFI1:0.184351952449;SOX17:0.181618770551;EGR1..3:0.133965892545;FOXL1:0.124744459998;HMX1:0.121783519329;UFEwm:0.117356587328;NR3C1:0.110458655473;SOX2:0.0979431513303;NFE2L1:0.0885271953735;KLF4:0.076337419457;TBX4,5:0.0724971459976;BACH2:0.0660430150226;NR1H4:0.0639040439572;ZNF238:0.055516209944;NFKB1_REL_RELA:0.0531665649214;FOSL2:0.0521729698286;STAT5{A,B}:0.0345904101544;FOS_FOS{B,L1}_JUN{B,D}:0.00587928279343;MED-1{core}:-0.00754095273371;NANOG:-0.0272373953366;MEF2{A,B,C,D}:-0.0432385614644;MZF1:-0.044911966097;NFE2:-0.0725875343296;AR:-0.0791372793558;GCM1,2:-0.0837102429497;NHLH1,2:-0.108956778827;STAT2,4,6:-0.11043866755;RFX1:-0.110842347277;ZNF384:-0.120375910569;FOXM1:-0.126638363013;NFY{A,B,C}:-0.130320368094;MTE{core}:-0.169783786413;ZNF143:-0.170627186603;FOXQ1:-0.193901229407;POU5F1:-0.201761948095;ALX4:-0.203803983073;NANOG{mouse}:-0.234262891742;RUNX1..3:-0.23904853799;HOX{A6,A7,B6,B7}:-0.258015206883;PRRX1,2:-0.273619452104;MYBL2:-0.315829294255;PAX8:-0.332460475738;NFE2L2:-0.351635759199;RORA:-0.363626091443;POU6F1:-0.372938284531;HLF:-0.389355932887;CUX2:-0.389813428719;ATF2:-0.407957514297;GATA6:-0.42533562815;ZFP161:-0.481133311361;E2F1..5:-0.490521200397;VSX1,2:-0.499877634439;ETS1,2:-0.507904485636;XBP1:-0.507910612198;EN1,2:-0.514871785451;FOX{F1,F2,J1}:-0.537156253762;CRX:-0.564584298676;CEBPA,B_DDIT3:-0.587968002195;ARID5B:-0.61682645733;ATF6:-0.636747472804;SPIB:-0.649010355715;POU3F1..4:-0.672446500795;DBP:-0.675936256601;PRDM1:-0.699634868605;TFDP1:-0.706551003036;PITX1..3:-0.716786388385;CDC5L:-0.717656757242;YY1:-0.721780418448;SOX5:-0.756675661511;BREu{core}:-0.802142596092;NFIL3:-0.814508702618;MYFfamily:-0.817538203088;HOXA9_MEIS1:-0.819202559268;TEF:-0.820536821127;SPI1:-0.8267213153;AIRE:-0.830859530332;NFATC1..3:-0.841395042748;SREBF1,2:-0.853154063308;PAX2:-0.858295030746;ALX1:-0.866554354529;NKX6-1,2:-0.892805996399;FOX{D1,D2}:-0.896245093657;HOX{A4,D4}:-0.915099853824;CDX1,2,4:-0.915539098954;POU1F1:-0.92564204755;OCT4_SOX2{dimer}:-0.931145859692;RFX2..5_RFXANK_RFXAP:-0.936850800263;MAFB:-0.973247417523;PAX6:-1.0252255085;NKX3-2:-1.02552334511;STAT1,3:-1.04053531965;HSF1,2:-1.04952249131;DMAP1_NCOR{1,2}_SMARC:-1.06535451734;AHR_ARNT_ARNT2:-1.07437288352;T:-1.08600803614;IRF1,2:-1.09141497782;CREB1:-1.10208037395;FOXP1:-1.10305130651;EVI1:-1.12285076857;NRF1:-1.12773883187;ELK1,4_GABP{A,B1}:-1.1308223522;RBPJ:-1.13707763737;HBP1_HMGB_SSRP1_UBTF:-1.13709593543;IRF7:-1.18627331061;NFIX:-1.20801189752;ATF4:-1.26248560598;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.3061167725;NKX3-1:-1.34115939211;FOXP3:-1.34990864611;PAX3,7:-1.35042792016;MYB:-1.35742797597;FOXD3:-1.36431826805;TGIF1:-1.36995360567;NKX2-1,4:-1.37299039888;GATA4:-1.3898545086;PDX1:-1.40665633674;ATF5_CREB3:-1.4800178065;NKX2-2,8:-1.480462153;FOXA2:-1.50781447068;HIF1A:-1.50896503711;ELF1,2,4:-1.57048960025;TLX2:-1.64907963111;FOX{I1,J2}:-1.69628000927;ZBTB16:-1.83262833119;PAX4:-1.83850272609;FOXO1,3,4:-1.90809987551;BPTF:-1.9923451752;IKZF2:-2.00070354192;FOXN1:-2.10076690576;HMGA1,2:-2.29680068618
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11679-122H5;search_select_hide=table117:FF:11679-122H5
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Renal Mesangial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12121
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typemesangial cell, intraglomerular
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC4205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005379
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12121 CAGE DRX008436 DRR009308
Accession ID Hg19

Library idBAMCTSS
CNhs12121 DRZ000733 DRZ002118
Accession ID Hg38

Library idBAMCTSS
CNhs12121 DRZ012083 DRZ013468
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0788
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.273
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.177
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0748
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.477
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0819
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.377
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.447
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.166
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.177
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.339
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.213
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.177
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0887
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.302
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.302
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.377
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12121

Jaspar motifP-value
MA0002.20.832
MA0003.10.309
MA0004.10.584
MA0006.10.17
MA0007.10.144
MA0009.10.631
MA0014.10.968
MA0017.10.122
MA0018.20.233
MA0019.10.0618
MA0024.10.0467
MA0025.10.969
MA0027.10.561
MA0028.10.0147
MA0029.10.229
MA0030.10.486
MA0031.10.0868
MA0035.20.123
MA0038.10.0807
MA0039.20.147
MA0040.10.689
MA0041.10.162
MA0042.10.769
MA0043.10.0325
MA0046.14.34574e-15
MA0047.20.234
MA0048.10.725
MA0050.18.09736e-4
MA0051.10.00633
MA0052.10.175
MA0055.10.128
MA0057.10.245
MA0058.10.606
MA0059.10.944
MA0060.10.0263
MA0061.10.537
MA0062.26.40528e-6
MA0065.20.0932
MA0066.10.533
MA0067.10.082
MA0068.10.886
MA0069.10.897
MA0070.10.00611
MA0071.10.296
MA0072.10.6
MA0073.10.944
MA0074.10.107
MA0076.11.16679e-4
MA0077.10.0724
MA0078.10.755
MA0079.20.396
MA0080.21.4506e-5
MA0081.10.00792
MA0083.14.22292e-4
MA0084.10.274
MA0087.10.732
MA0088.10.779
MA0090.10.00616
MA0091.10.454
MA0092.10.896
MA0093.10.611
MA0099.20.167
MA0100.10.0307
MA0101.10.863
MA0102.20.00475
MA0103.10.00597
MA0104.20.284
MA0105.10.857
MA0106.10.329
MA0107.10.396
MA0108.21.8239e-7
MA0111.10.182
MA0112.20.163
MA0113.10.52
MA0114.10.21
MA0115.10.712
MA0116.10.775
MA0117.10.111
MA0119.10.959
MA0122.10.655
MA0124.10.804
MA0125.10.366
MA0131.10.124
MA0135.10.0265
MA0136.12.88478e-9
MA0137.20.219
MA0138.20.368
MA0139.10.805
MA0140.10.924
MA0141.10.151
MA0142.10.217
MA0143.10.342
MA0144.10.894
MA0145.10.166
MA0146.10.045
MA0147.10.364
MA0148.10.585
MA0149.10.889
MA0150.10.108
MA0152.10.121
MA0153.14.2403e-6
MA0154.10.337
MA0155.10.024
MA0156.12.81689e-6
MA0157.10.0509
MA0159.10.263
MA0160.10.447
MA0162.10.136
MA0163.10.992
MA0164.10.893
MA0258.10.166
MA0259.10.194



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12121

Novel motifP-value
10.355
100.0862
1000.25
1010.228
1020.703
1030.67
1040.481
1050.256
1060.0531
1070.00267
1080.373
1090.326
110.414
1100.394
1110.685
1120.726
1130.975
1140.347
1150.121
1160.253
1170.7
1180.796
1190.379
120.903
1200.542
1210.897
1220.331
1230.00486
1240.285
1250.195
1260.741
1270.434
1280.168
1290.0976
130.567
1300.397
1310.35
1320.05
1330.215
1340.966
1350.933
1360.563
1370.00394
1380.189
1390.516
140.658
1400.947
1410.106
1420.565
1430.801
1440.614
1450.355
1460.0795
1470.676
1480.123
1490.423
150.223
1500.331
1510.663
1520.055
1530.0807
1540.222
1550.965
1560.572
1570.328
1580.252
1590.595
160.453
1600.0958
1610.389
1620.0499
1630.526
1640.55
1650.0751
1660.8
1670.17
1680.918
1690.165
170.463
180.85
190.44
20.294
200.78
210.543
220.181
230.518
240.547
250.175
260.374
270.402
280.219
290.604
30.647
300.112
310.34
320.00215
330.727
340.129
350.266
360.624
370.39
380.745
390.312
40.555
400.0242
410.282
420.488
430.911
440.865
450.155
460.639
470.972
480.676
490.581
50.281
500.298
510.387
520.281
530.402
540.381
550.342
560.365
570.511
580.278
590.0419
60.241
600.604
610.589
620.216
630.472
640.398
650.0709
660.583
670.421
680.0393
690.15
70.571
700.622
710.519
720.323
730.0705
740.179
750.727
760.076
770.0201
780.861
790.573
80.297
800.635
810.275
820.696
830.69
840.717
850.814
860.714
870.367
880.354
890.142
90.387
900.00206
910.341
920.813
930.302
940.466
950.434
960.467
970.74
980.914
990.00488



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12121


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0000650 (mesangial cell)
1000500 (kidney interstitial cell)
1000618 (juxtaglomerular complex cell)
1001318 (renal interstitial pericyte)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
1000612 (kidney corpuscule cell)
0002173 (extraglomerular mesangial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003891 (stroma)
0005172 (abdomen element)
0003567 (abdomen connective tissue)
0003838 (abdominal segment connective tissue)
0003586 (trunk connective tissue)
0010317 (germ layer / neural crest derived structure)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0005169 (interstitial tissue)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0002321 (extraglomerular mesangium)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0005215 (kidney interstitium)
0001229 (renal corpuscle)
0002303 (juxtaglomerular apparatus)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0002319 (mesangium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000154 (human renal mesangial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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