FF:11679-122H5: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (25 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005379 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008436;DRR009308;DRZ000733;DRZ002118;DRZ012083;DRZ013468 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0005172,UBERON:0003567,UBERON:0003838,UBERON:0003586,UBERON:0010317,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0004810,UBERON:0001285,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0002319 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0000650,CL:1000500,CL:1000618,CL:1001318,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:0002173 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000154 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11679-122H5 | |id=FF:11679-122H5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000154 | ||
|is_obsolete= | |||
|library_id=CNhs12121 | |||
|library_id_phase_based=2:CNhs12121 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11679 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11679 | |||
|name=Renal Mesangial Cells, donor3 | |name=Renal Mesangial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12121,LSID839,release011,COMPLETED | |profile_hcage=CNhs12121,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0882901116674475,0,0,0,0,0.0162621932485086,0,0.376990443051726,0.327249015888163,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449836377460049,0,0,0,0,0,0.0786223270668372,0,0,0.265863158610593,0,0,0,0,0,0,0,0,0,0,0,0,0.46393054634621,0.224488025092633,0,0,0,0,0,0,0,0.277364672791404,0,0,0,0,0,0.176580223334895,0.176580223334895,0.0795878620922895,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149768425192691,0.364546686819449,0,0,0,0.0829270041791358,0.346450627766746,0.0882901116674475,0,0,0,-0.0980353512377064,0.232303745820758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.309870966133793,0.436191632999686,0,0,0.0696137978740165,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.0705986519506698,0.15021499363704,0.071028932925467,0.334583490857666,0,0,-0.037348152321936,0,0,0,0,0,0,0,0,0,0.04846035638233,0,0.34840719680014,0,0,0,0,0,-0.305472230898407,0,0.098299514689228,-0.0683442610773682,0,0,0,0,0.27032726376831,0,0.055700739541154,0.0938600550114774,0.0801516476913251,0.311057737301175,-0.055712496781182,0,0,0,-0.0510114591071345,-0.364026338147649,0,0,0.55978488665416,-0.0930595068932115,0,0,-0.391044581551635,0,-0.15981019037442,0.388707537435535,0,-0.25106334161531,0,0,0,0,0,0,0,0,0,0,0,0.0933881510756295,-0.326988596678969,0,0.176580223334895,0.301763235794132,0.0648631004348706,0.145697700907568,0.398819748389455,0.0400102454465152,0.22987323185191,0.46690266569258,0,0.749336797675024,0.0397738020266584,-0.0006264912157814,0.151070462654801,-0.0477483012330081,0.164651620858615,0.594160043872168,0.413177668258629,0.176580223334895,0.147668956399297,0.215046313088116,0.223439858097727,0.43076699039905,0.157581312988423,0.349801836916332,0.436810466319708,0,0,0,-0.287045153856292,0,0,-0.0120160810956359,0.078708508823428,0.371131826263049,0.363771440852437,0.336750595169964,0.026576703519896,0.199639201107843,0.284125440346712,0,0.206755913386937,0.00511683051741774,0,0.082092248021496,0.0779114868586826,0.144799937660416,0.26050525406744,0.0888222545377804,-0.0851577134215255,-0.0683442610773682,0.239171729564513,0.321466656782705,0.454552234081686,0.301763235794132,0.221332393932308,0.297554196374707,0,0,0,0,0.176580223334895,0.241101656001519,0.160650452025969,0.581297938773667,0,0.194924221465743,-0.0104948668398113,0.073494866269067,0,-0.102382780154819,0,-0.121493929026398,0.234161855735662,0,0.123355759659509,-0.520081645613219,0.313107937042135,0.692901255533491,-0.0584468268118252,-0.331652185386276,0.0331812414929813,0.11254103863351,-0.487176628996095,0.147004970677764,0.934388376684953,0.0916012100051664,-0.484725002128925,0.0206444634346111,0.150595816714952,0.383760115176309,0,-0.399576305388741,0,-0.606809016102718,0,0.492504725764155,0.460885190728887,0.16387001322779,-0.699005651007242,0,0.479025199465947,0.374601416062503,0.176580223334895,0.429093298104612,0,0.176580223334895,0.663786416994572,0.0438659267307244,-0.211650427864589,-0.0506993450117473,0,0.0562741078019128,0,0.176580223334895,-0.0503893109000425,-0.235476037764389,0.176580223334895,0.023768760970173,-0.00604352640491956,0.137345852048012,0.0606091498999606,0.176580223334895,0,0.376814871167516,0,0.603159387808477,0.88685168553159,0.222329183401939,0.648774572687318,0.224772291894382,0.0117430519820358,0.580304487745882,0,0,0.221291982424279,0,0.210955449556379,0,0,0.261725595930483,0,0,0,0,0,0,0,0,0,0,0,0,-0.7357102875832,-0.354833330216448,0,0.398819748389455,0,0,0,0.930712044767738,0,0,0,0.603159387808477,-0.661618794051938,0,0.422097736001055,0.0882901116674475,0,0,0,-0.03914317921858,-0.0266563387598291,0,0.044717516837263,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.168182216652856,0,0,0,0.464607491641517,0,0,0,0,-0.373863019615301,0,0,0.0224224018588598,0,0.330727757195754,0.521577508261635,0,0.0076048128625181,0.831484487372066,1.38468885591081,0,0,0.48021476145342,0,0,-0.432784933824771,0,0,0,0,0,0,0,0,0,0.263784120981382,0,0,0,0,0,0,0,0,0,0,0,-0.257457151683414,0.0843561666763843,0,0,0,0,0,0,0,-0.0241060230789031,0.0819529103986593,0,0,0,0,0,0,0,0,-0.294845716328347,0,0,0,0,0,0.0795878620922895,0,0,0,0.176580223334895,0.477917808441431,0,0,0.376990443051726,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.460232031364099,0,0,0,0,0,0,0,0.203265335175047,0,0.176580223334895,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.0162621932485086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278827277485693,0,0.176580223334895,0.176580223334895,0,0,-0.0332184784383142,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.0786223270668372,0,0,0.0588488080965398,0,0,0,0,0.176580223334895,0,0.101954093930925,0.495989456364556,0.143837858715514,0,0,0,0.184786157082058,0,0,0.258981406477403,0.176580223334895,0.109802835915993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449836377460049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318801280120817,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.301763235794132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176580223334895,0,0,0,0.398819748389455,0,0,0,0.197730520858082,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12835814809584,0,0.217386603564105,0,0,0,0,0,0,0,0,0,0,0,0.176580223334895,0,0,0,0.176580223334895,0.380208002252026,0,0,0,0,0.497478041016557,0,0,0,0,0,0,0,0.063453120095213,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224488025092633,0,0,0.542269890904108,0,0,0,0,0,0,0,0,0,0,0,0,0.416778454231011,0,0,0,0,0,0,0,0,0,0,0.554729345582808,0,0,0,0,0,0,0,0,0.65435257524524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293013377414057,0.436191632999686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.266433964439951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0585931892947715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176580223334895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.176580223334895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0689463026190595,0,0,0,0,0,0,0,0.179067238797131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0.176580223334895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239049316690569,0,0,0,0.0968382246699166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265863158610593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882901116674475,0,0,0,0.149471891673141,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.239049316690569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217562657968776,0,0,-0.0422874684771159,0,0.368403073195263,-0.0247755500138547,0,0,0,0,0,0.302797027372573,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.103491871988071,0,0.18069203039807,0.00174505986744039,0,0.176580223334895,0.350445754437553,0,0.165542233520534,0.176580223334895,0,0,0.00158732824459562,0.00194437718335172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176580223334895,0.176580223334895,-0.0568589461625992,0.275639516082906,0,0.0992623790307137,0,0,-0.0931584797961538,0,0,0,0.449155744303888 | |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC4205 | |rna_catalog_number=SC4205 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:1063 | |sample_cell_catalog=lot:1063 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.67772956581465e-235!GO:0005737;cytoplasm;6.97497083255142e-176!GO:0043226;organelle;3.23625866369851e-139!GO:0043229;intracellular organelle;4.13551282881934e-139!GO:0043231;intracellular membrane-bound organelle;1.16761931897804e-135!GO:0043227;membrane-bound organelle;2.62818648987245e-135!GO:0044444;cytoplasmic part;8.77054711271336e-128!GO:0044422;organelle part;4.82485891371787e-105!GO:0044446;intracellular organelle part;4.55188562499783e-104!GO:0005515;protein binding;1.97413256263136e-71!GO:0005739;mitochondrion;6.20422370761633e-69!GO:0032991;macromolecular complex;1.50241096261365e-63!GO:0044238;primary metabolic process;8.05807992445648e-61!GO:0044237;cellular metabolic process;1.30480976766116e-60!GO:0030529;ribonucleoprotein complex;5.71245189034511e-60!GO:0043170;macromolecule metabolic process;4.11653449741893e-52!GO:0043233;organelle lumen;1.57074760959399e-46!GO:0031974;membrane-enclosed lumen;1.57074760959399e-46!GO:0031090;organelle membrane;1.03838909801174e-45!GO:0005840;ribosome;3.70820526606963e-44!GO:0044429;mitochondrial part;3.77720258379303e-44!GO:0009058;biosynthetic process;9.07240389170616e-42!GO:0019538;protein metabolic process;4.11536448141355e-40!GO:0003735;structural constituent of ribosome;1.28682649656129e-39!GO:0044428;nuclear part;5.26698980455437e-39!GO:0006412;translation;1.06732388766925e-38!GO:0016043;cellular component organization and biogenesis;1.72642691561894e-38!GO:0044249;cellular biosynthetic process;1.84086586422596e-38!GO:0003723;RNA binding;2.97838334267298e-37!GO:0005634;nucleus;3.04697031507097e-36!GO:0044260;cellular macromolecule metabolic process;6.09335032054816e-36!GO:0031967;organelle envelope;6.17707156626175e-36!GO:0031975;envelope;1.46575012961297e-35!GO:0044267;cellular protein metabolic process;4.0263015155441e-35!GO:0033279;ribosomal subunit;5.13477382280715e-35!GO:0009059;macromolecule biosynthetic process;4.72794476259346e-33!GO:0043234;protein complex;3.14180182943568e-31!GO:0005740;mitochondrial envelope;1.65217791509279e-30!GO:0005829;cytosol;5.10167373048676e-29!GO:0015031;protein transport;1.06353296481888e-28!GO:0031966;mitochondrial membrane;2.30915058618369e-28!GO:0033036;macromolecule localization;3.46202914670995e-28!GO:0019866;organelle inner membrane;1.23496310004744e-27!GO:0008104;protein localization;9.6824422734482e-27!GO:0005743;mitochondrial inner membrane;1.45003935730877e-26!GO:0045184;establishment of protein localization;5.76610341147624e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.37019309553868e-26!GO:0006996;organelle organization and biogenesis;1.27594540064888e-25!GO:0006396;RNA processing;2.99187997811767e-25!GO:0043283;biopolymer metabolic process;9.84284540000463e-25!GO:0046907;intracellular transport;4.61355224201847e-24!GO:0031981;nuclear lumen;3.3967880990191e-23!GO:0065003;macromolecular complex assembly;4.52277412519493e-23!GO:0043228;non-membrane-bound organelle;6.33882683427667e-22!GO:0043232;intracellular non-membrane-bound organelle;6.33882683427667e-22!GO:0010467;gene expression;2.10925720170913e-21!GO:0022607;cellular component assembly;2.85299598404779e-21!GO:0044445;cytosolic part;3.54420606378439e-20!GO:0016071;mRNA metabolic process;4.2461038361509e-20!GO:0008380;RNA splicing;2.14351605169623e-19!GO:0006886;intracellular protein transport;2.46583654031261e-19!GO:0015934;large ribosomal subunit;6.15295657986515e-19!GO:0006119;oxidative phosphorylation;3.3888449229631e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.29499299714365e-18!GO:0044455;mitochondrial membrane part;1.45801283950615e-17!GO:0031980;mitochondrial lumen;4.0426369654198e-17!GO:0005759;mitochondrial matrix;4.0426369654198e-17!GO:0015935;small ribosomal subunit;4.38187056330924e-17!GO:0006397;mRNA processing;6.91267355633146e-17!GO:0005783;endoplasmic reticulum;7.78488267872632e-17!GO:0012505;endomembrane system;2.6722423902964e-16!GO:0048770;pigment granule;3.18632009561315e-16!GO:0042470;melanosome;3.18632009561315e-16!GO:0005794;Golgi apparatus;3.29733816270168e-16!GO:0051186;cofactor metabolic process;2.88471977156918e-15!GO:0005746;mitochondrial respiratory chain;3.69503514121581e-15!GO:0006259;DNA metabolic process;4.99915806528645e-15!GO:0051641;cellular localization;8.9371050830029e-15!GO:0008134;transcription factor binding;1.0535735236724e-14!GO:0005681;spliceosome;1.10349078315928e-14!GO:0051649;establishment of cellular localization;1.18825593604157e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.26322976849827e-14!GO:0012501;programmed cell death;2.02115946132998e-14!GO:0005654;nucleoplasm;2.15931236888513e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.43602362765694e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.44197548517022e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.37773228428172e-14!GO:0003954;NADH dehydrogenase activity;5.37773228428172e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.37773228428172e-14!GO:0006915;apoptosis;7.21225093155095e-14!GO:0006457;protein folding;7.42330885065564e-14!GO:0044432;endoplasmic reticulum part;2.84413026355408e-13!GO:0007049;cell cycle;6.52378253272436e-13!GO:0044451;nucleoplasm part;1.42220025825088e-12!GO:0008219;cell death;1.86316564118783e-12!GO:0016265;death;1.86316564118783e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.17482015231653e-12!GO:0043412;biopolymer modification;2.95081677741955e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.9888794520297e-12!GO:0042773;ATP synthesis coupled electron transport;5.9888794520297e-12!GO:0016874;ligase activity;6.86019504174786e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.11825209959716e-12!GO:0045271;respiratory chain complex I;7.11825209959716e-12!GO:0005747;mitochondrial respiratory chain complex I;7.11825209959716e-12!GO:0005761;mitochondrial ribosome;9.99486723914304e-12!GO:0000313;organellar ribosome;9.99486723914304e-12!GO:0006732;coenzyme metabolic process;1.01963135889076e-11!GO:0000166;nucleotide binding;1.17943657022879e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.36232875421752e-11!GO:0006464;protein modification process;3.05637573361237e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.38406510188014e-11!GO:0016462;pyrophosphatase activity;5.67653414745714e-11!GO:0044265;cellular macromolecule catabolic process;6.05802928260716e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.33114817939613e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;6.76457236164735e-11!GO:0044248;cellular catabolic process;9.64316247117175e-11!GO:0048523;negative regulation of cellular process;1.10802751576913e-10!GO:0022402;cell cycle process;1.21739549971574e-10!GO:0043067;regulation of programmed cell death;2.07745527911509e-10!GO:0006605;protein targeting;2.9814093902413e-10!GO:0042981;regulation of apoptosis;3.0296948541382e-10!GO:0009057;macromolecule catabolic process;3.50740283414822e-10!GO:0017111;nucleoside-triphosphatase activity;4.89781414332363e-10!GO:0000502;proteasome complex (sensu Eukaryota);5.16641468982114e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.91590500973647e-10!GO:0006512;ubiquitin cycle;7.99756316727489e-10!GO:0009055;electron carrier activity;8.66502486182593e-10!GO:0043285;biopolymer catabolic process;1.52167046488743e-09!GO:0051082;unfolded protein binding;1.7298500585799e-09!GO:0048519;negative regulation of biological process;1.7557666110745e-09!GO:0003712;transcription cofactor activity;2.51251109344453e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.11821920685743e-09!GO:0005789;endoplasmic reticulum membrane;3.25581985545133e-09!GO:0006323;DNA packaging;3.42358041468686e-09!GO:0051726;regulation of cell cycle;3.84540343211388e-09!GO:0022618;protein-RNA complex assembly;3.84642288620087e-09!GO:0000074;regulation of progression through cell cycle;5.60118715711705e-09!GO:0043687;post-translational protein modification;7.36184810687627e-09!GO:0032553;ribonucleotide binding;7.64608888691227e-09!GO:0032555;purine ribonucleotide binding;7.64608888691227e-09!GO:0005730;nucleolus;1.01368082768597e-08!GO:0016192;vesicle-mediated transport;1.61167180810829e-08!GO:0017076;purine nucleotide binding;2.11153575335893e-08!GO:0007005;mitochondrion organization and biogenesis;2.48074762202651e-08!GO:0051188;cofactor biosynthetic process;2.48186867139361e-08!GO:0048193;Golgi vesicle transport;2.94969415184805e-08!GO:0051603;proteolysis involved in cellular protein catabolic process;2.96686701769666e-08!GO:0005793;ER-Golgi intermediate compartment;3.05169217873344e-08!GO:0000278;mitotic cell cycle;3.08155806798892e-08!GO:0019941;modification-dependent protein catabolic process;3.66504449088714e-08!GO:0043632;modification-dependent macromolecule catabolic process;3.66504449088714e-08!GO:0044257;cellular protein catabolic process;4.79135550391678e-08!GO:0051276;chromosome organization and biogenesis;5.03264635876849e-08!GO:0006511;ubiquitin-dependent protein catabolic process;5.82930481081317e-08!GO:0030163;protein catabolic process;5.82930481081317e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;5.82930481081317e-08!GO:0000375;RNA splicing, via transesterification reactions;5.82930481081317e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.82930481081317e-08!GO:0043069;negative regulation of programmed cell death;7.78069880000549e-08!GO:0008135;translation factor activity, nucleic acid binding;1.05328018849352e-07!GO:0000785;chromatin;1.05328018849352e-07!GO:0016740;transferase activity;1.09689690320312e-07!GO:0006916;anti-apoptosis;1.31281425121813e-07!GO:0006333;chromatin assembly or disassembly;1.43039571815327e-07!GO:0006163;purine nucleotide metabolic process;1.64220330068744e-07!GO:0065004;protein-DNA complex assembly;1.64366264006502e-07!GO:0006461;protein complex assembly;1.82021698908605e-07!GO:0043066;negative regulation of apoptosis;1.99152276855889e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.30210303897706e-07!GO:0005768;endosome;2.81305892492433e-07!GO:0005635;nuclear envelope;3.11128455672447e-07!GO:0044431;Golgi apparatus part;3.34343916063375e-07!GO:0009150;purine ribonucleotide metabolic process;3.56258286598361e-07!GO:0009259;ribonucleotide metabolic process;3.56996285876743e-07!GO:0006164;purine nucleotide biosynthetic process;4.9487589664202e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.2572300186455e-07!GO:0016491;oxidoreductase activity;5.28244892143422e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.48955976814444e-07!GO:0031497;chromatin assembly;5.86630136697154e-07!GO:0045786;negative regulation of progression through cell cycle;6.78168961283669e-07!GO:0031965;nuclear membrane;7.79323109682948e-07!GO:0006334;nucleosome assembly;8.48599148043972e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.46122648379295e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.04679587384372e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.13440983151721e-06!GO:0032559;adenyl ribonucleotide binding;1.18212741682776e-06!GO:0005524;ATP binding;1.24482996746398e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.34377689873716e-06!GO:0009056;catabolic process;1.34940687130665e-06!GO:0006366;transcription from RNA polymerase II promoter;1.45342076219657e-06!GO:0009260;ribonucleotide biosynthetic process;1.79198509800126e-06!GO:0031988;membrane-bound vesicle;1.79694193727058e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.9695731287025e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.24789248679239e-06!GO:0006399;tRNA metabolic process;2.27350348075267e-06!GO:0050794;regulation of cellular process;2.52679709567564e-06!GO:0003676;nucleic acid binding;2.61415731927693e-06!GO:0008639;small protein conjugating enzyme activity;2.84785416366438e-06!GO:0006913;nucleocytoplasmic transport;2.93396452420545e-06!GO:0009141;nucleoside triphosphate metabolic process;3.01038901169221e-06!GO:0016070;RNA metabolic process;3.01038901169221e-06!GO:0044427;chromosomal part;3.05575374394324e-06!GO:0016564;transcription repressor activity;3.13622446447304e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.23636132763599e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.23636132763599e-06!GO:0030554;adenyl nucleotide binding;3.41722257489176e-06!GO:0017038;protein import;3.42211546996076e-06!GO:0003714;transcription corepressor activity;3.61880067426085e-06!GO:0009117;nucleotide metabolic process;4.29713341168756e-06!GO:0009108;coenzyme biosynthetic process;4.76352066449494e-06!GO:0015986;ATP synthesis coupled proton transport;4.79162689069091e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.79162689069091e-06!GO:0006446;regulation of translational initiation;4.99665213957027e-06!GO:0004842;ubiquitin-protein ligase activity;5.1415888673387e-06!GO:0051169;nuclear transport;5.20004460267623e-06!GO:0009060;aerobic respiration;5.28631256576598e-06!GO:0016563;transcription activator activity;5.48413006671597e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.39093783102478e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.39093783102478e-06!GO:0042254;ribosome biogenesis and assembly;6.85331571678856e-06!GO:0003924;GTPase activity;7.28783319893673e-06!GO:0016604;nuclear body;7.31884034691391e-06!GO:0005694;chromosome;7.63388110244557e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.90468266646076e-06!GO:0005788;endoplasmic reticulum lumen;7.94908616951396e-06!GO:0005773;vacuole;8.35248456073467e-06!GO:0016853;isomerase activity;8.36127831511165e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.21261076010055e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.21261076010055e-06!GO:0030120;vesicle coat;1.04309560516399e-05!GO:0030662;coated vesicle membrane;1.04309560516399e-05!GO:0006793;phosphorus metabolic process;1.07524971848702e-05!GO:0006796;phosphate metabolic process;1.07524971848702e-05!GO:0005905;coated pit;1.21067898533938e-05!GO:0048468;cell development;1.21270015864296e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.22890249846021e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.22890249846021e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.22890249846021e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.24735718101097e-05!GO:0019787;small conjugating protein ligase activity;1.28173637011552e-05!GO:0065002;intracellular protein transport across a membrane;1.35840595414936e-05!GO:0003743;translation initiation factor activity;1.55875148999276e-05!GO:0044262;cellular carbohydrate metabolic process;1.68183093198972e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.70696660357074e-05!GO:0000139;Golgi membrane;1.76918147389519e-05!GO:0016568;chromatin modification;1.85846472089169e-05!GO:0006413;translational initiation;2.02197257407929e-05!GO:0046034;ATP metabolic process;2.15562498232436e-05!GO:0044453;nuclear membrane part;2.18661707668615e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.46220160292003e-05!GO:0045333;cellular respiration;2.5484231715741e-05!GO:0019829;cation-transporting ATPase activity;2.55116603918285e-05!GO:0045259;proton-transporting ATP synthase complex;2.72374856325171e-05!GO:0008565;protein transporter activity;2.83183637152314e-05!GO:0016049;cell growth;2.86266458869281e-05!GO:0031410;cytoplasmic vesicle;3.02509460611942e-05!GO:0001558;regulation of cell growth;3.06792952105445e-05!GO:0051246;regulation of protein metabolic process;3.07468620042461e-05!GO:0048475;coated membrane;3.07468620042461e-05!GO:0030117;membrane coat;3.07468620042461e-05!GO:0043038;amino acid activation;3.31512551023213e-05!GO:0006418;tRNA aminoacylation for protein translation;3.31512551023213e-05!GO:0043039;tRNA aminoacylation;3.31512551023213e-05!GO:0008361;regulation of cell size;3.33410934561214e-05!GO:0031982;vesicle;3.88415732769158e-05!GO:0005762;mitochondrial large ribosomal subunit;4.02752418931406e-05!GO:0000315;organellar large ribosomal subunit;4.02752418931406e-05!GO:0006974;response to DNA damage stimulus;4.11115904213306e-05!GO:0022403;cell cycle phase;4.11115904213306e-05!GO:0016881;acid-amino acid ligase activity;4.85523311494448e-05!GO:0050789;regulation of biological process;4.91432584306937e-05!GO:0016469;proton-transporting two-sector ATPase complex;5.07649832366807e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.14624371484946e-05!GO:0031324;negative regulation of cellular metabolic process;5.57576156985273e-05!GO:0006754;ATP biosynthetic process;5.64055463393098e-05!GO:0006753;nucleoside phosphate metabolic process;5.64055463393098e-05!GO:0008610;lipid biosynthetic process;5.75155291855411e-05!GO:0016310;phosphorylation;5.94769605383403e-05!GO:0030036;actin cytoskeleton organization and biogenesis;6.90660402480269e-05!GO:0044440;endosomal part;7.17710835528822e-05!GO:0010008;endosome membrane;7.17710835528822e-05!GO:0000323;lytic vacuole;8.59306499829367e-05!GO:0005764;lysosome;8.59306499829367e-05!GO:0048522;positive regulation of cellular process;9.09171257359988e-05!GO:0005770;late endosome;0.00010569882056163!GO:0005667;transcription factor complex;0.000118256110530971!GO:0042802;identical protein binding;0.000125917414502889!GO:0016126;sterol biosynthetic process;0.000136038486876447!GO:0031252;leading edge;0.000142561797753712!GO:0006099;tricarboxylic acid cycle;0.000170484930651075!GO:0046356;acetyl-CoA catabolic process;0.000170484930651075!GO:0000786;nucleosome;0.000170484930651075!GO:0007067;mitosis;0.000172020784546602!GO:0009719;response to endogenous stimulus;0.000180619969443413!GO:0009892;negative regulation of metabolic process;0.00019289134391245!GO:0019899;enzyme binding;0.00019289134391245!GO:0042623;ATPase activity, coupled;0.000195867128251323!GO:0000087;M phase of mitotic cell cycle;0.000197701378896997!GO:0008654;phospholipid biosynthetic process;0.00020231913484081!GO:0015630;microtubule cytoskeleton;0.00020410262821277!GO:0007264;small GTPase mediated signal transduction;0.00020426388123656!GO:0006084;acetyl-CoA metabolic process;0.000207713697481438!GO:0016607;nuclear speck;0.000224828398744459!GO:0006752;group transfer coenzyme metabolic process;0.000232814161696586!GO:0005791;rough endoplasmic reticulum;0.000253656169174364!GO:0006695;cholesterol biosynthetic process;0.000257500331835851!GO:0045454;cell redox homeostasis;0.000313504722198082!GO:0033116;ER-Golgi intermediate compartment membrane;0.000314005403752527!GO:0040008;regulation of growth;0.000330764004851305!GO:0006364;rRNA processing;0.000331104400110357!GO:0007243;protein kinase cascade;0.000331104400110357!GO:0051427;hormone receptor binding;0.000353748261198812!GO:0006888;ER to Golgi vesicle-mediated transport;0.000355342070974778!GO:0005525;GTP binding;0.000360019393750368!GO:0003713;transcription coactivator activity;0.000374542116849755!GO:0030029;actin filament-based process;0.000410428715828107!GO:0005643;nuclear pore;0.000410428715828107!GO:0004298;threonine endopeptidase activity;0.000410428715828107!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000435286463858807!GO:0065009;regulation of a molecular function;0.000447702007286194!GO:0051329;interphase of mitotic cell cycle;0.000453333541923655!GO:0030133;transport vesicle;0.000479752202205511!GO:0051187;cofactor catabolic process;0.000479752202205511!GO:0006281;DNA repair;0.000490633927768126!GO:0007010;cytoskeleton organization and biogenesis;0.000496854444848272!GO:0006260;DNA replication;0.000509040063129053!GO:0016887;ATPase activity;0.000517922682501439!GO:0016072;rRNA metabolic process;0.000563721430041168!GO:0005798;Golgi-associated vesicle;0.000578085386817089!GO:0016481;negative regulation of transcription;0.000594032638381337!GO:0030176;integral to endoplasmic reticulum membrane;0.000596460103478186!GO:0006082;organic acid metabolic process;0.000602060019408585!GO:0016787;hydrolase activity;0.000619190239818955!GO:0035257;nuclear hormone receptor binding;0.000622062177137862!GO:0008637;apoptotic mitochondrial changes;0.00065049167747252!GO:0000245;spliceosome assembly;0.00069608348316273!GO:0016779;nucleotidyltransferase activity;0.00069608348316273!GO:0051170;nuclear import;0.000698108855084553!GO:0016859;cis-trans isomerase activity;0.000703390856817699!GO:0019752;carboxylic acid metabolic process;0.000754939851658776!GO:0030308;negative regulation of cell growth;0.000770706106248168!GO:0008092;cytoskeletal protein binding;0.000816045087974208!GO:0009165;nucleotide biosynthetic process;0.000895765548839583!GO:0006606;protein import into nucleus;0.00089678830434464!GO:0006091;generation of precursor metabolites and energy;0.000925358746013943!GO:0045792;negative regulation of cell size;0.000932533938077257!GO:0051325;interphase;0.00093516668563617!GO:0009109;coenzyme catabolic process;0.000960055713959509!GO:0000314;organellar small ribosomal subunit;0.00099442805758495!GO:0005763;mitochondrial small ribosomal subunit;0.00099442805758495!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00100619224443484!GO:0030867;rough endoplasmic reticulum membrane;0.00112106997980804!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00114788468015118!GO:0006839;mitochondrial transport;0.00115935557176381!GO:0043623;cellular protein complex assembly;0.00116093444948845!GO:0007006;mitochondrial membrane organization and biogenesis;0.00120743706431924!GO:0016044;membrane organization and biogenesis;0.00142059963665046!GO:0008250;oligosaccharyl transferase complex;0.00148433788716121!GO:0043065;positive regulation of apoptosis;0.00149948000374561!GO:0003697;single-stranded DNA binding;0.00159912088664354!GO:0032446;protein modification by small protein conjugation;0.001653023795404!GO:0043068;positive regulation of programmed cell death;0.00165825781995658!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00167837595610573!GO:0032561;guanyl ribonucleotide binding;0.00176998676175354!GO:0019001;guanyl nucleotide binding;0.00176998676175354!GO:0016567;protein ubiquitination;0.00180266016813013!GO:0030118;clathrin coat;0.00180648648086982!GO:0043681;protein import into mitochondrion;0.00181716872852546!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00183279626570515!GO:0008632;apoptotic program;0.00186631878933642!GO:0045926;negative regulation of growth;0.00186885800918014!GO:0006414;translational elongation;0.00187555292209117!GO:0019843;rRNA binding;0.00195311185029632!GO:0046930;pore complex;0.0020592830670153!GO:0006626;protein targeting to mitochondrion;0.00211361637636186!GO:0003899;DNA-directed RNA polymerase activity;0.00215018324349938!GO:0040029;regulation of gene expression, epigenetic;0.00221515717207968!GO:0015980;energy derivation by oxidation of organic compounds;0.00228320525588252!GO:0005996;monosaccharide metabolic process;0.00239946233248859!GO:0005774;vacuolar membrane;0.00248117434299893!GO:0048471;perinuclear region of cytoplasm;0.0025032092495192!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00258330016935219!GO:0009967;positive regulation of signal transduction;0.00265508776667126!GO:0001836;release of cytochrome c from mitochondria;0.00268465484332775!GO:0051920;peroxiredoxin activity;0.00268803533497752!GO:0046474;glycerophospholipid biosynthetic process;0.00275164487741081!GO:0005048;signal sequence binding;0.00278096528279686!GO:0030132;clathrin coat of coated pit;0.00281373132006211!GO:0048518;positive regulation of biological process;0.00287364411113324!GO:0051789;response to protein stimulus;0.00294314544445245!GO:0006986;response to unfolded protein;0.00294314544445245!GO:0051301;cell division;0.00309841123243151!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00319138034862411!GO:0006066;alcohol metabolic process;0.00329307325257336!GO:0000151;ubiquitin ligase complex;0.00331415511815025!GO:0019318;hexose metabolic process;0.00333133137410042!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00341088617485983!GO:0031902;late endosome membrane;0.00345162078043867!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0038681012127438!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00400717303553765!GO:0006778;porphyrin metabolic process;0.00401260881939265!GO:0033013;tetrapyrrole metabolic process;0.00401260881939265!GO:0043284;biopolymer biosynthetic process;0.00411141114857586!GO:0031968;organelle outer membrane;0.0041712539423509!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00431721386422453!GO:0015399;primary active transmembrane transporter activity;0.00431721386422453!GO:0006509;membrane protein ectodomain proteolysis;0.00444151271053974!GO:0033619;membrane protein proteolysis;0.00444151271053974!GO:0006740;NADPH regeneration;0.00448023945030445!GO:0006098;pentose-phosphate shunt;0.00448023945030445!GO:0018196;peptidyl-asparagine modification;0.00448023945030445!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00448023945030445!GO:0046467;membrane lipid biosynthetic process;0.00451108109711804!GO:0043488;regulation of mRNA stability;0.00464339042770473!GO:0043487;regulation of RNA stability;0.00464339042770473!GO:0019867;outer membrane;0.00469072281530767!GO:0005885;Arp2/3 protein complex;0.00477151562883373!GO:0030125;clathrin vesicle coat;0.00493680735587168!GO:0030665;clathrin coated vesicle membrane;0.00493680735587168!GO:0045892;negative regulation of transcription, DNA-dependent;0.00510965880906373!GO:0005769;early endosome;0.00517210319031005!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00517953696994683!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00524188115413009!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00527908578222738!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00527908578222738!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00527908578222738!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00550544749616376!GO:0017166;vinculin binding;0.0055119115121418!GO:0016860;intramolecular oxidoreductase activity;0.00560493687412903!GO:0006979;response to oxidative stress;0.00561163489246439!GO:0006917;induction of apoptosis;0.0059702291101944!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00611937023934818!GO:0015002;heme-copper terminal oxidase activity;0.00611937023934818!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00611937023934818!GO:0004129;cytochrome-c oxidase activity;0.00611937023934818!GO:0006520;amino acid metabolic process;0.00612242191261095!GO:0005741;mitochondrial outer membrane;0.00616238099235785!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00616238099235785!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00634535941320109!GO:0005765;lysosomal membrane;0.00649488981634157!GO:0030658;transport vesicle membrane;0.00659840861615313!GO:0044437;vacuolar part;0.00670038078283549!GO:0051101;regulation of DNA binding;0.00674207708931444!GO:0000279;M phase;0.00688208133956087!GO:0046519;sphingoid metabolic process;0.006924628807719!GO:0030659;cytoplasmic vesicle membrane;0.006924628807719!GO:0033673;negative regulation of kinase activity;0.00703943673575474!GO:0006469;negative regulation of protein kinase activity;0.00703943673575474!GO:0030119;AP-type membrane coat adaptor complex;0.00736117411699197!GO:0005975;carbohydrate metabolic process;0.00736219554961012!GO:0004576;oligosaccharyl transferase activity;0.00740068966502722!GO:0006779;porphyrin biosynthetic process;0.00740068966502722!GO:0033014;tetrapyrrole biosynthetic process;0.00740068966502722!GO:0006595;polyamine metabolic process;0.00754700025624914!GO:0012502;induction of programmed cell death;0.00794554748304162!GO:0051348;negative regulation of transferase activity;0.0083104148406611!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00837743428050381!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00837743428050381!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00838617191687671!GO:0042168;heme metabolic process;0.00857539169817755!GO:0007040;lysosome organization and biogenesis;0.00875394138844405!GO:0006007;glucose catabolic process;0.00877889720745393!GO:0043154;negative regulation of caspase activity;0.00886719782030594!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00892182030560095!GO:0007265;Ras protein signal transduction;0.00892182030560095!GO:0043566;structure-specific DNA binding;0.00907625784685133!GO:0030131;clathrin adaptor complex;0.00920196067480441!GO:0045893;positive regulation of transcription, DNA-dependent;0.00943625509559116!GO:0008286;insulin receptor signaling pathway;0.0095552170459198!GO:0006672;ceramide metabolic process;0.00965105824731089!GO:0004860;protein kinase inhibitor activity;0.00965105824731089!GO:0000902;cell morphogenesis;0.00992915422644197!GO:0032989;cellular structure morphogenesis;0.00992915422644197!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0105211799892951!GO:0006403;RNA localization;0.0105211799892951!GO:0016125;sterol metabolic process;0.0108057288735801!GO:0051287;NAD binding;0.0108057288735801!GO:0045941;positive regulation of transcription;0.0109164108476531!GO:0005874;microtubule;0.0109739289301827!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0110728470333643!GO:0015992;proton transport;0.011263456924487!GO:0043021;ribonucleoprotein binding;0.011324723624976!GO:0050657;nucleic acid transport;0.0115653539278366!GO:0051236;establishment of RNA localization;0.0115653539278366!GO:0050658;RNA transport;0.0115653539278366!GO:0005684;U2-dependent spliceosome;0.0116446612957313!GO:0008047;enzyme activator activity;0.0116826228354625!GO:0031301;integral to organelle membrane;0.0119486302587523!GO:0065007;biological regulation;0.0120827242124892!GO:0006807;nitrogen compound metabolic process;0.0121209217485121!GO:0006818;hydrogen transport;0.0124578733232525!GO:0006613;cotranslational protein targeting to membrane;0.0127338959340986!GO:0051098;regulation of binding;0.0129786199935296!GO:0001726;ruffle;0.0131084284302301!GO:0030880;RNA polymerase complex;0.0132725947778516!GO:0016301;kinase activity;0.013381436140778!GO:0030660;Golgi-associated vesicle membrane;0.0134700506270553!GO:0009966;regulation of signal transduction;0.0137550632414629!GO:0007346;regulation of progression through mitotic cell cycle;0.0140200783136345!GO:0048487;beta-tubulin binding;0.0140296456155191!GO:0030031;cell projection biogenesis;0.0143338922808558!GO:0004680;casein kinase activity;0.0143669280285211!GO:0006650;glycerophospholipid metabolic process;0.0149804328629641!GO:0044433;cytoplasmic vesicle part;0.0154021815900718!GO:0008629;induction of apoptosis by intracellular signals;0.0156194319496114!GO:0008026;ATP-dependent helicase activity;0.0157184303761049!GO:0006783;heme biosynthetic process;0.0157912216025758!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.015909983303131!GO:0004386;helicase activity;0.0164602239022539!GO:0004674;protein serine/threonine kinase activity;0.0165910382169087!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0169310426135422!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0170370073104154!GO:0043492;ATPase activity, coupled to movement of substances;0.0171128175501042!GO:0003746;translation elongation factor activity;0.0171479389253828!GO:0000118;histone deacetylase complex;0.0178588438279714!GO:0006402;mRNA catabolic process;0.0183654478687918!GO:0007033;vacuole organization and biogenesis;0.018414413815409!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0187026591888892!GO:0008033;tRNA processing;0.0189997258778338!GO:0016272;prefoldin complex;0.0202582304627134!GO:0006739;NADP metabolic process;0.0208798547878024!GO:0031543;peptidyl-proline dioxygenase activity;0.0218888029330459!GO:0006790;sulfur metabolic process;0.022663603195685!GO:0009308;amine metabolic process;0.0234709815113441!GO:0030145;manganese ion binding;0.0238053415791396!GO:0007050;cell cycle arrest;0.0238053415791396!GO:0005815;microtubule organizing center;0.0247769905568721!GO:0045936;negative regulation of phosphate metabolic process;0.0252693396854098!GO:0003684;damaged DNA binding;0.0253719041713945!GO:0046870;cadmium ion binding;0.0254756596759702!GO:0006733;oxidoreduction coenzyme metabolic process;0.0255737616876072!GO:0035258;steroid hormone receptor binding;0.0257239686177509!GO:0005813;centrosome;0.0258465348296997!GO:0005862;muscle thin filament tropomyosin;0.0262392855309366!GO:0006749;glutathione metabolic process;0.0265058310207545!GO:0050790;regulation of catalytic activity;0.0265854649489815!GO:0043414;biopolymer methylation;0.0265957745309484!GO:0001666;response to hypoxia;0.0267804664172868!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0268315487516463!GO:0000428;DNA-directed RNA polymerase complex;0.0268315487516463!GO:0007242;intracellular signaling cascade;0.0268315487516463!GO:0019798;procollagen-proline dioxygenase activity;0.0269251443021097!GO:0050662;coenzyme binding;0.0273656565100598!GO:0046489;phosphoinositide biosynthetic process;0.0275875507302072!GO:0006767;water-soluble vitamin metabolic process;0.027798556584426!GO:0006643;membrane lipid metabolic process;0.0278477026260104!GO:0033559;unsaturated fatty acid metabolic process;0.0288023793886492!GO:0006636;unsaturated fatty acid biosynthetic process;0.0288023793886492!GO:0019206;nucleoside kinase activity;0.0295134227806701!GO:0004177;aminopeptidase activity;0.0297923313896413!GO:0006289;nucleotide-excision repair;0.029898053209361!GO:0005852;eukaryotic translation initiation factor 3 complex;0.029898053209361!GO:0003779;actin binding;0.029898053209361!GO:0031072;heat shock protein binding;0.0303353537265513!GO:0006220;pyrimidine nucleotide metabolic process;0.0316719579144719!GO:0050178;phenylpyruvate tautomerase activity;0.0318161476532517!GO:0000049;tRNA binding;0.0326436360710851!GO:0030027;lamellipodium;0.0342227486257694!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0343201389941296!GO:0006383;transcription from RNA polymerase III promoter;0.0343877955626599!GO:0031272;regulation of pseudopodium formation;0.034800372555944!GO:0031269;pseudopodium formation;0.034800372555944!GO:0031344;regulation of cell projection organization and biogenesis;0.034800372555944!GO:0031268;pseudopodium organization and biogenesis;0.034800372555944!GO:0031346;positive regulation of cell projection organization and biogenesis;0.034800372555944!GO:0031274;positive regulation of pseudopodium formation;0.034800372555944!GO:0046426;negative regulation of JAK-STAT cascade;0.0349192135046905!GO:0012506;vesicle membrane;0.03519592092268!GO:0016569;covalent chromatin modification;0.035637232314033!GO:0008538;proteasome activator activity;0.0358620425519857!GO:0046483;heterocycle metabolic process;0.0365117191996446!GO:0006633;fatty acid biosynthetic process;0.0368497223257511!GO:0006338;chromatin remodeling;0.0371529884994943!GO:0016783;sulfurtransferase activity;0.0371991924649377!GO:0003756;protein disulfide isomerase activity;0.0371991924649377!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0371991924649377!GO:0051270;regulation of cell motility;0.0374829243122511!GO:0008283;cell proliferation;0.0374829243122511!GO:0045806;negative regulation of endocytosis;0.0374829243122511!GO:0044255;cellular lipid metabolic process;0.0378498624122213!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0380074452454892!GO:0006013;mannose metabolic process;0.0385798330494378!GO:0043433;negative regulation of transcription factor activity;0.039059319735572!GO:0006769;nicotinamide metabolic process;0.0394715279788234!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0397959384013596!GO:0010257;NADH dehydrogenase complex assembly;0.0397959384013596!GO:0033108;mitochondrial respiratory chain complex assembly;0.0397959384013596!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0402767209174566!GO:0051059;NF-kappaB binding;0.0404839317737625!GO:0046365;monosaccharide catabolic process;0.0404839317737625!GO:0019210;kinase inhibitor activity;0.0410885488372109!GO:0051090;regulation of transcription factor activity;0.0432421778898878!GO:0006458;'de novo' protein folding;0.0433681408783717!GO:0051084;'de novo' posttranslational protein folding;0.0433681408783717!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0433681408783717!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0434103980228752!GO:0006897;endocytosis;0.0443616953025722!GO:0010324;membrane invagination;0.0443616953025722!GO:0032507;maintenance of cellular protein localization;0.0445476997143504!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0450496651036386!GO:0008203;cholesterol metabolic process;0.0451735190407377!GO:0000123;histone acetyltransferase complex;0.045195916676933!GO:0030663;COPI coated vesicle membrane;0.0454367693173453!GO:0030126;COPI vesicle coat;0.0454367693173453!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0472381371812866!GO:0051252;regulation of RNA metabolic process;0.0475932502894386!GO:0005869;dynactin complex;0.0485565693446837!GO:0051028;mRNA transport;0.0485629049512059!GO:0000305;response to oxygen radical;0.0487816681729426!GO:0019320;hexose catabolic process;0.0489355723356742!GO:0046394;carboxylic acid biosynthetic process;0.0489355723356742!GO:0016053;organic acid biosynthetic process;0.0489355723356742!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0493194921439432!GO:0008154;actin polymerization and/or depolymerization;0.0493194921439432!GO:0000096;sulfur amino acid metabolic process;0.0496011366615938!GO:0016570;histone modification;0.0499612728848396 | |||
|sample_id=11679 | |sample_id=11679 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=XCPE1{core}:2.54141739629;ZNF423:2.17322068227;GTF2A1,2:2.11099482676;ESR1:2.08515769507;RXRA_VDR{dimer}:2.04584532259;EBF1:2.02114971025;TFCP2:1.88772099877;SP1:1.83857877654;GLI1..3:1.83577195988;ZNF148:1.78281481887;RXR{A,B,G}:1.7822203822;TFAP2{A,C}:1.74757401781;GZF1:1.40045575682;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37192644721;HNF1A:1.3026949568;RREB1:1.21288489925;ZIC1..3:1.19824636695;PPARG:1.18502825309;HIC1:1.14742235393;PBX1:1.12836048786;ZBTB6:1.04011089298;TFAP2B:1.00191067459;LHX3,4:0.967024912507;POU2F1..3:0.950793972117;LMO2:0.917495743232;PATZ1:0.89840736418;EP300:0.894441230372;TEAD1:0.889206410932;NR5A1,2:0.866878876038;bHLH_family:0.857442999484;MYOD1:0.820628125901;PAX5:0.80652307182;TLX1..3_NFIC{dimer}:0.798074576784;HOX{A5,B5}:0.796981443596;SPZ1:0.784602638335;MTF1:0.781140825986;TAL1_TCF{3,4,12}:0.773581219803;SNAI1..3:0.711730843466;ZEB1:0.685050934337;GTF2I:0.639668190696;TFAP4:0.609406244557;NKX2-3_NKX2-5:0.603475605084;ESRRA:0.58803055618;SRF:0.585963341203;ONECUT1,2:0.580751733087;TP53:0.55582389042;NR6A1:0.534735088001;IKZF1:0.525819988642;HAND1,2:0.517885441829;MAZ:0.447254143012;LEF1_TCF7_TCF7L1,2:0.447143290727;REST:0.43223425619;HES1:0.419491175195;HNF4A_NR2F1,2:0.393728685155;ADNP_IRX_SIX_ZHX:0.335978258377;GFI1B:0.320519561006;SOX{8,9,10}:0.315787479404;TBP:0.305666413462;TOPORS:0.268001368712;JUN:0.215726692502;PAX1,9:0.214546239327;SMAD1..7,9:0.196685657712;GFI1:0.184351952449;SOX17:0.181618770551;EGR1..3:0.133965892545;FOXL1:0.124744459998;HMX1:0.121783519329;UFEwm:0.117356587328;NR3C1:0.110458655473;SOX2:0.0979431513303;NFE2L1:0.0885271953735;KLF4:0.076337419457;TBX4,5:0.0724971459976;BACH2:0.0660430150226;NR1H4:0.0639040439572;ZNF238:0.055516209944;NFKB1_REL_RELA:0.0531665649214;FOSL2:0.0521729698286;STAT5{A,B}:0.0345904101544;FOS_FOS{B,L1}_JUN{B,D}:0.00587928279343;MED-1{core}:-0.00754095273371;NANOG:-0.0272373953366;MEF2{A,B,C,D}:-0.0432385614644;MZF1:-0.044911966097;NFE2:-0.0725875343296;AR:-0.0791372793558;GCM1,2:-0.0837102429497;NHLH1,2:-0.108956778827;STAT2,4,6:-0.11043866755;RFX1:-0.110842347277;ZNF384:-0.120375910569;FOXM1:-0.126638363013;NFY{A,B,C}:-0.130320368094;MTE{core}:-0.169783786413;ZNF143:-0.170627186603;FOXQ1:-0.193901229407;POU5F1:-0.201761948095;ALX4:-0.203803983073;NANOG{mouse}:-0.234262891742;RUNX1..3:-0.23904853799;HOX{A6,A7,B6,B7}:-0.258015206883;PRRX1,2:-0.273619452104;MYBL2:-0.315829294255;PAX8:-0.332460475738;NFE2L2:-0.351635759199;RORA:-0.363626091443;POU6F1:-0.372938284531;HLF:-0.389355932887;CUX2:-0.389813428719;ATF2:-0.407957514297;GATA6:-0.42533562815;ZFP161:-0.481133311361;E2F1..5:-0.490521200397;VSX1,2:-0.499877634439;ETS1,2:-0.507904485636;XBP1:-0.507910612198;EN1,2:-0.514871785451;FOX{F1,F2,J1}:-0.537156253762;CRX:-0.564584298676;CEBPA,B_DDIT3:-0.587968002195;ARID5B:-0.61682645733;ATF6:-0.636747472804;SPIB:-0.649010355715;POU3F1..4:-0.672446500795;DBP:-0.675936256601;PRDM1:-0.699634868605;TFDP1:-0.706551003036;PITX1..3:-0.716786388385;CDC5L:-0.717656757242;YY1:-0.721780418448;SOX5:-0.756675661511;BREu{core}:-0.802142596092;NFIL3:-0.814508702618;MYFfamily:-0.817538203088;HOXA9_MEIS1:-0.819202559268;TEF:-0.820536821127;SPI1:-0.8267213153;AIRE:-0.830859530332;NFATC1..3:-0.841395042748;SREBF1,2:-0.853154063308;PAX2:-0.858295030746;ALX1:-0.866554354529;NKX6-1,2:-0.892805996399;FOX{D1,D2}:-0.896245093657;HOX{A4,D4}:-0.915099853824;CDX1,2,4:-0.915539098954;POU1F1:-0.92564204755;OCT4_SOX2{dimer}:-0.931145859692;RFX2..5_RFXANK_RFXAP:-0.936850800263;MAFB:-0.973247417523;PAX6:-1.0252255085;NKX3-2:-1.02552334511;STAT1,3:-1.04053531965;HSF1,2:-1.04952249131;DMAP1_NCOR{1,2}_SMARC:-1.06535451734;AHR_ARNT_ARNT2:-1.07437288352;T:-1.08600803614;IRF1,2:-1.09141497782;CREB1:-1.10208037395;FOXP1:-1.10305130651;EVI1:-1.12285076857;NRF1:-1.12773883187;ELK1,4_GABP{A,B1}:-1.1308223522;RBPJ:-1.13707763737;HBP1_HMGB_SSRP1_UBTF:-1.13709593543;IRF7:-1.18627331061;NFIX:-1.20801189752;ATF4:-1.26248560598;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.3061167725;NKX3-1:-1.34115939211;FOXP3:-1.34990864611;PAX3,7:-1.35042792016;MYB:-1.35742797597;FOXD3:-1.36431826805;TGIF1:-1.36995360567;NKX2-1,4:-1.37299039888;GATA4:-1.3898545086;PDX1:-1.40665633674;ATF5_CREB3:-1.4800178065;NKX2-2,8:-1.480462153;FOXA2:-1.50781447068;HIF1A:-1.50896503711;ELF1,2,4:-1.57048960025;TLX2:-1.64907963111;FOX{I1,J2}:-1.69628000927;ZBTB16:-1.83262833119;PAX4:-1.83850272609;FOXO1,3,4:-1.90809987551;BPTF:-1.9923451752;IKZF2:-2.00070354192;FOXN1:-2.10076690576;HMGA1,2:-2.29680068618 | |top_motifs=XCPE1{core}:2.54141739629;ZNF423:2.17322068227;GTF2A1,2:2.11099482676;ESR1:2.08515769507;RXRA_VDR{dimer}:2.04584532259;EBF1:2.02114971025;TFCP2:1.88772099877;SP1:1.83857877654;GLI1..3:1.83577195988;ZNF148:1.78281481887;RXR{A,B,G}:1.7822203822;TFAP2{A,C}:1.74757401781;GZF1:1.40045575682;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37192644721;HNF1A:1.3026949568;RREB1:1.21288489925;ZIC1..3:1.19824636695;PPARG:1.18502825309;HIC1:1.14742235393;PBX1:1.12836048786;ZBTB6:1.04011089298;TFAP2B:1.00191067459;LHX3,4:0.967024912507;POU2F1..3:0.950793972117;LMO2:0.917495743232;PATZ1:0.89840736418;EP300:0.894441230372;TEAD1:0.889206410932;NR5A1,2:0.866878876038;bHLH_family:0.857442999484;MYOD1:0.820628125901;PAX5:0.80652307182;TLX1..3_NFIC{dimer}:0.798074576784;HOX{A5,B5}:0.796981443596;SPZ1:0.784602638335;MTF1:0.781140825986;TAL1_TCF{3,4,12}:0.773581219803;SNAI1..3:0.711730843466;ZEB1:0.685050934337;GTF2I:0.639668190696;TFAP4:0.609406244557;NKX2-3_NKX2-5:0.603475605084;ESRRA:0.58803055618;SRF:0.585963341203;ONECUT1,2:0.580751733087;TP53:0.55582389042;NR6A1:0.534735088001;IKZF1:0.525819988642;HAND1,2:0.517885441829;MAZ:0.447254143012;LEF1_TCF7_TCF7L1,2:0.447143290727;REST:0.43223425619;HES1:0.419491175195;HNF4A_NR2F1,2:0.393728685155;ADNP_IRX_SIX_ZHX:0.335978258377;GFI1B:0.320519561006;SOX{8,9,10}:0.315787479404;TBP:0.305666413462;TOPORS:0.268001368712;JUN:0.215726692502;PAX1,9:0.214546239327;SMAD1..7,9:0.196685657712;GFI1:0.184351952449;SOX17:0.181618770551;EGR1..3:0.133965892545;FOXL1:0.124744459998;HMX1:0.121783519329;UFEwm:0.117356587328;NR3C1:0.110458655473;SOX2:0.0979431513303;NFE2L1:0.0885271953735;KLF4:0.076337419457;TBX4,5:0.0724971459976;BACH2:0.0660430150226;NR1H4:0.0639040439572;ZNF238:0.055516209944;NFKB1_REL_RELA:0.0531665649214;FOSL2:0.0521729698286;STAT5{A,B}:0.0345904101544;FOS_FOS{B,L1}_JUN{B,D}:0.00587928279343;MED-1{core}:-0.00754095273371;NANOG:-0.0272373953366;MEF2{A,B,C,D}:-0.0432385614644;MZF1:-0.044911966097;NFE2:-0.0725875343296;AR:-0.0791372793558;GCM1,2:-0.0837102429497;NHLH1,2:-0.108956778827;STAT2,4,6:-0.11043866755;RFX1:-0.110842347277;ZNF384:-0.120375910569;FOXM1:-0.126638363013;NFY{A,B,C}:-0.130320368094;MTE{core}:-0.169783786413;ZNF143:-0.170627186603;FOXQ1:-0.193901229407;POU5F1:-0.201761948095;ALX4:-0.203803983073;NANOG{mouse}:-0.234262891742;RUNX1..3:-0.23904853799;HOX{A6,A7,B6,B7}:-0.258015206883;PRRX1,2:-0.273619452104;MYBL2:-0.315829294255;PAX8:-0.332460475738;NFE2L2:-0.351635759199;RORA:-0.363626091443;POU6F1:-0.372938284531;HLF:-0.389355932887;CUX2:-0.389813428719;ATF2:-0.407957514297;GATA6:-0.42533562815;ZFP161:-0.481133311361;E2F1..5:-0.490521200397;VSX1,2:-0.499877634439;ETS1,2:-0.507904485636;XBP1:-0.507910612198;EN1,2:-0.514871785451;FOX{F1,F2,J1}:-0.537156253762;CRX:-0.564584298676;CEBPA,B_DDIT3:-0.587968002195;ARID5B:-0.61682645733;ATF6:-0.636747472804;SPIB:-0.649010355715;POU3F1..4:-0.672446500795;DBP:-0.675936256601;PRDM1:-0.699634868605;TFDP1:-0.706551003036;PITX1..3:-0.716786388385;CDC5L:-0.717656757242;YY1:-0.721780418448;SOX5:-0.756675661511;BREu{core}:-0.802142596092;NFIL3:-0.814508702618;MYFfamily:-0.817538203088;HOXA9_MEIS1:-0.819202559268;TEF:-0.820536821127;SPI1:-0.8267213153;AIRE:-0.830859530332;NFATC1..3:-0.841395042748;SREBF1,2:-0.853154063308;PAX2:-0.858295030746;ALX1:-0.866554354529;NKX6-1,2:-0.892805996399;FOX{D1,D2}:-0.896245093657;HOX{A4,D4}:-0.915099853824;CDX1,2,4:-0.915539098954;POU1F1:-0.92564204755;OCT4_SOX2{dimer}:-0.931145859692;RFX2..5_RFXANK_RFXAP:-0.936850800263;MAFB:-0.973247417523;PAX6:-1.0252255085;NKX3-2:-1.02552334511;STAT1,3:-1.04053531965;HSF1,2:-1.04952249131;DMAP1_NCOR{1,2}_SMARC:-1.06535451734;AHR_ARNT_ARNT2:-1.07437288352;T:-1.08600803614;IRF1,2:-1.09141497782;CREB1:-1.10208037395;FOXP1:-1.10305130651;EVI1:-1.12285076857;NRF1:-1.12773883187;ELK1,4_GABP{A,B1}:-1.1308223522;RBPJ:-1.13707763737;HBP1_HMGB_SSRP1_UBTF:-1.13709593543;IRF7:-1.18627331061;NFIX:-1.20801189752;ATF4:-1.26248560598;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.3061167725;NKX3-1:-1.34115939211;FOXP3:-1.34990864611;PAX3,7:-1.35042792016;MYB:-1.35742797597;FOXD3:-1.36431826805;TGIF1:-1.36995360567;NKX2-1,4:-1.37299039888;GATA4:-1.3898545086;PDX1:-1.40665633674;ATF5_CREB3:-1.4800178065;NKX2-2,8:-1.480462153;FOXA2:-1.50781447068;HIF1A:-1.50896503711;ELF1,2,4:-1.57048960025;TLX2:-1.64907963111;FOX{I1,J2}:-1.69628000927;ZBTB16:-1.83262833119;PAX4:-1.83850272609;FOXO1,3,4:-1.90809987551;BPTF:-1.9923451752;IKZF2:-2.00070354192;FOXN1:-2.10076690576;HMGA1,2:-2.29680068618 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11679-122H5;search_select_hide=table117:FF:11679-122H5 | |||
}} | }} | ||
Latest revision as of 18:14, 4 June 2020
| Name: | Renal Mesangial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12121 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12121
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12121
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.355 |
| 10 | 10 | 0.0862 |
| 100 | 100 | 0.25 |
| 101 | 101 | 0.228 |
| 102 | 102 | 0.703 |
| 103 | 103 | 0.67 |
| 104 | 104 | 0.481 |
| 105 | 105 | 0.256 |
| 106 | 106 | 0.0531 |
| 107 | 107 | 0.00267 |
| 108 | 108 | 0.373 |
| 109 | 109 | 0.326 |
| 11 | 11 | 0.414 |
| 110 | 110 | 0.394 |
| 111 | 111 | 0.685 |
| 112 | 112 | 0.726 |
| 113 | 113 | 0.975 |
| 114 | 114 | 0.347 |
| 115 | 115 | 0.121 |
| 116 | 116 | 0.253 |
| 117 | 117 | 0.7 |
| 118 | 118 | 0.796 |
| 119 | 119 | 0.379 |
| 12 | 12 | 0.903 |
| 120 | 120 | 0.542 |
| 121 | 121 | 0.897 |
| 122 | 122 | 0.331 |
| 123 | 123 | 0.00486 |
| 124 | 124 | 0.285 |
| 125 | 125 | 0.195 |
| 126 | 126 | 0.741 |
| 127 | 127 | 0.434 |
| 128 | 128 | 0.168 |
| 129 | 129 | 0.0976 |
| 13 | 13 | 0.567 |
| 130 | 130 | 0.397 |
| 131 | 131 | 0.35 |
| 132 | 132 | 0.05 |
| 133 | 133 | 0.215 |
| 134 | 134 | 0.966 |
| 135 | 135 | 0.933 |
| 136 | 136 | 0.563 |
| 137 | 137 | 0.00394 |
| 138 | 138 | 0.189 |
| 139 | 139 | 0.516 |
| 14 | 14 | 0.658 |
| 140 | 140 | 0.947 |
| 141 | 141 | 0.106 |
| 142 | 142 | 0.565 |
| 143 | 143 | 0.801 |
| 144 | 144 | 0.614 |
| 145 | 145 | 0.355 |
| 146 | 146 | 0.0795 |
| 147 | 147 | 0.676 |
| 148 | 148 | 0.123 |
| 149 | 149 | 0.423 |
| 15 | 15 | 0.223 |
| 150 | 150 | 0.331 |
| 151 | 151 | 0.663 |
| 152 | 152 | 0.055 |
| 153 | 153 | 0.0807 |
| 154 | 154 | 0.222 |
| 155 | 155 | 0.965 |
| 156 | 156 | 0.572 |
| 157 | 157 | 0.328 |
| 158 | 158 | 0.252 |
| 159 | 159 | 0.595 |
| 16 | 16 | 0.453 |
| 160 | 160 | 0.0958 |
| 161 | 161 | 0.389 |
| 162 | 162 | 0.0499 |
| 163 | 163 | 0.526 |
| 164 | 164 | 0.55 |
| 165 | 165 | 0.0751 |
| 166 | 166 | 0.8 |
| 167 | 167 | 0.17 |
| 168 | 168 | 0.918 |
| 169 | 169 | 0.165 |
| 17 | 17 | 0.463 |
| 18 | 18 | 0.85 |
| 19 | 19 | 0.44 |
| 2 | 2 | 0.294 |
| 20 | 20 | 0.78 |
| 21 | 21 | 0.543 |
| 22 | 22 | 0.181 |
| 23 | 23 | 0.518 |
| 24 | 24 | 0.547 |
| 25 | 25 | 0.175 |
| 26 | 26 | 0.374 |
| 27 | 27 | 0.402 |
| 28 | 28 | 0.219 |
| 29 | 29 | 0.604 |
| 3 | 3 | 0.647 |
| 30 | 30 | 0.112 |
| 31 | 31 | 0.34 |
| 32 | 32 | 0.00215 |
| 33 | 33 | 0.727 |
| 34 | 34 | 0.129 |
| 35 | 35 | 0.266 |
| 36 | 36 | 0.624 |
| 37 | 37 | 0.39 |
| 38 | 38 | 0.745 |
| 39 | 39 | 0.312 |
| 4 | 4 | 0.555 |
| 40 | 40 | 0.0242 |
| 41 | 41 | 0.282 |
| 42 | 42 | 0.488 |
| 43 | 43 | 0.911 |
| 44 | 44 | 0.865 |
| 45 | 45 | 0.155 |
| 46 | 46 | 0.639 |
| 47 | 47 | 0.972 |
| 48 | 48 | 0.676 |
| 49 | 49 | 0.581 |
| 5 | 5 | 0.281 |
| 50 | 50 | 0.298 |
| 51 | 51 | 0.387 |
| 52 | 52 | 0.281 |
| 53 | 53 | 0.402 |
| 54 | 54 | 0.381 |
| 55 | 55 | 0.342 |
| 56 | 56 | 0.365 |
| 57 | 57 | 0.511 |
| 58 | 58 | 0.278 |
| 59 | 59 | 0.0419 |
| 6 | 6 | 0.241 |
| 60 | 60 | 0.604 |
| 61 | 61 | 0.589 |
| 62 | 62 | 0.216 |
| 63 | 63 | 0.472 |
| 64 | 64 | 0.398 |
| 65 | 65 | 0.0709 |
| 66 | 66 | 0.583 |
| 67 | 67 | 0.421 |
| 68 | 68 | 0.0393 |
| 69 | 69 | 0.15 |
| 7 | 7 | 0.571 |
| 70 | 70 | 0.622 |
| 71 | 71 | 0.519 |
| 72 | 72 | 0.323 |
| 73 | 73 | 0.0705 |
| 74 | 74 | 0.179 |
| 75 | 75 | 0.727 |
| 76 | 76 | 0.076 |
| 77 | 77 | 0.0201 |
| 78 | 78 | 0.861 |
| 79 | 79 | 0.573 |
| 8 | 8 | 0.297 |
| 80 | 80 | 0.635 |
| 81 | 81 | 0.275 |
| 82 | 82 | 0.696 |
| 83 | 83 | 0.69 |
| 84 | 84 | 0.717 |
| 85 | 85 | 0.814 |
| 86 | 86 | 0.714 |
| 87 | 87 | 0.367 |
| 88 | 88 | 0.354 |
| 89 | 89 | 0.142 |
| 9 | 9 | 0.387 |
| 90 | 90 | 0.00206 |
| 91 | 91 | 0.341 |
| 92 | 92 | 0.813 |
| 93 | 93 | 0.302 |
| 94 | 94 | 0.466 |
| 95 | 95 | 0.434 |
| 96 | 96 | 0.467 |
| 97 | 97 | 0.74 |
| 98 | 98 | 0.914 |
| 99 | 99 | 0.00488 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12121
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0000650 (mesangial cell)
1000500 (kidney interstitial cell)
1000618 (juxtaglomerular complex cell)
1001318 (renal interstitial pericyte)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
1000612 (kidney corpuscule cell)
0002173 (extraglomerular mesangial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003891 (stroma)
0005172 (abdomen element)
0003567 (abdomen connective tissue)
0003838 (abdominal segment connective tissue)
0003586 (trunk connective tissue)
0010317 (germ layer / neural crest derived structure)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0005169 (interstitial tissue)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0002321 (extraglomerular mesangium)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0005215 (kidney interstitium)
0001229 (renal corpuscle)
0002303 (juxtaglomerular apparatus)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0002319 (mesangium)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000154 (human renal mesangial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
