FFCP PHASE1:Hg19::chr1:156117149..156117176,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64218|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10729|TSSclassifier=S|UniProt=Q5TCI6|association_with_transcript=0bp_to_ENST00000435124_5end|coexpression_cluster_id=C3878|description=CAGE_peak_3_at_SEMA4A_5end|id=chr1:156117149..156117176,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002586;4.81e-10;3!CL:0000149;1.24e-07;4|ontology_enrichment_celltype_v019_2=CL:0002586,3.86e-10,3;CL:0000149,1.06e-07,4|ontology_enrichment_development_v019=UBERON:0006601;4.92e-19;82!UBERON:0006241;4.88e-10;3!UBERON:0003057;4.88e-10;3!UBERON:0006215;1.24e-09;3!UBERON:0010122;6.99e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.64e-67!57;UBERON:0005068!6.64e-67!57;UBERON:0006241!6.64e-67!57;UBERON:0007135!6.64e-67!57;UBERON:0005743!4.89e-63!86;UBERON:0000073!1.66e-57!94;UBERON:0001016!1.66e-57!94;UBERON:0000955!1.40e-56!69;UBERON:0006238!1.40e-56!69;UBERON:0001017!1.72e-56!82;UBERON:0003075!2.58e-56!86;UBERON:0007284!2.58e-56!86;UBERON:0002616!2.29e-55!59;UBERON:0002346!5.48e-55!90;UBERON:0002780!1.64e-52!41;UBERON:0001890!1.64e-52!41;UBERON:0006240!1.64e-52!41;UBERON:0003080!5.33e-51!42;UBERON:0001893!7.92e-51!34;UBERON:0002020!8.63e-51!34;UBERON:0003528!8.63e-51!34;UBERON:0002791!5.45e-49!33;UBERON:0001869!1.16e-47!32;UBERON:0003056!9.41e-43!61;UBERON:0000033!3.41e-38!123;UBERON:0002619!2.45e-37!22;UBERON:0000153!5.17e-37!129;UBERON:0007811!5.17e-37!129;UBERON:0000956!4.67e-35!25;UBERON:0000203!4.67e-35!25;UBERON:0001950!1.31e-33!20;UBERON:0007023!1.04e-31!115;UBERON:0004121!1.41e-28!169;UBERON:0000924!1.50e-28!173;UBERON:0006601!1.50e-28!173;UBERON:0002420!1.58e-17!9;UBERON:0007245!1.58e-17!9;UBERON:0010009!1.58e-17!9;UBERON:0010011!1.58e-17!9;UBERON:0000454!1.58e-17!9;UBERON:0002308!4.06e-17!9;UBERON:0000125!4.06e-17!9;UBERON:0003076!2.54e-16!15;UBERON:0003057!2.54e-16!15;UBERON:0000025!4.00e-15!194;UBERON:0009663!9.27e-14!7;UBERON:0000200!4.47e-12!6;UBERON:0001871!5.71e-12!7;UBERON:0004733!1.05e-11!12;UBERON:0002028!1.05e-11!12;UBERON:0007277!1.05e-11!12;UBERON:0002298!3.27e-11!8;UBERON:0000349!4.51e-11!5;UBERON:0004111!6.09e-11!241;UBERON:0004732!1.21e-10!13;UBERON:0000483!2.14e-10!309;UBERON:0000119!3.92e-10!312;UBERON:0002021!8.63e-10!5;UBERON:0001872!1.39e-09!5;UBERON:0000369!3.55e-09!4;UBERON:0002435!3.55e-09!4;UBERON:0000204!3.55e-09!4;UBERON:0010082!3.55e-09!4;UBERON:0000477!5.89e-09!286;UBERON:0000064!1.40e-08!219;UBERON:0000475!3.24e-08!365;UBERON:0002680!2.56e-07!9;UBERON:0001895!2.56e-07!9;UBERON:0010092!2.56e-07!9;UBERON:0005383!3.03e-07!3;UBERON:0005382!3.03e-07!3;UBERON:0000966!7.54e-07!5;UBERON:0005388!7.54e-07!5;UBERON:0001802!7.54e-07!5|ontology_enrichment_uberon_v019=UBERON:0002791;2.01e-59;32!UBERON:0001893;2.23e-59;34!UBERON:0003528;5.46e-59;34!UBERON:0002020;5.46e-59;34!UBERON:0001869;1.09e-58;32!UBERON:0002619;5.83e-52;22!UBERON:0002780;3.61e-51;41!UBERON:0001890;3.61e-51;41!UBERON:0000073;5.32e-50;53!UBERON:0002616;5.32e-50;53!UBERON:0001950;8.47e-46;20!UBERON:0000956;2.53e-45;25!UBERON:0000203;2.53e-45;25!UBERON:0001017;5.15e-38;75!UBERON:0000955;5.14e-36;68!UBERON:0001016;1.29e-28;83!UBERON:0002420;1.50e-28;9!UBERON:0007245;1.50e-28;9!UBERON:0010009;1.50e-28;9!UBERON:0010011;1.50e-28;9!UBERON:0000454;1.50e-28;9!UBERON:0000125;7.88e-28;9!UBERON:0002308;7.88e-28;9!UBERON:0009663;3.40e-22;7!UBERON:0004733;2.87e-19;12!UBERON:0002028;2.87e-19;12!UBERON:0000200;3.48e-19;6!UBERON:0002298;2.40e-18;6!UBERON:0004732;1.18e-17;13!UBERON:0000349;1.53e-17;5!UBERON:0001871;8.62e-17;6!UBERON:0002021;2.79e-15;5!UBERON:0007023;1.11e-14;114!UBERON:0000369;2.40e-14;4!UBERON:0002435;2.40e-14;4!UBERON:0000204;2.40e-14;4!UBERON:0002680;7.52e-12;9!UBERON:0001895;7.52e-12;9!UBERON:0011216;9.22e-12;132!UBERON:0005383;4.09e-11;3!UBERON:0005382;4.09e-11;3!UBERON:0000966;1.19e-10;5!UBERON:0005388;1.19e-10;5!UBERON:0001802;1.19e-10;5!UBERON:0001870;1.44e-10;3!UBERON:0000988;3.46e-10;3!UBERON:0001781;4.81e-10;3!UBERON:0001782;4.81e-10;3!UBERON:0002240;4.88e-10;3!UBERON:0005174;4.88e-10;3!UBERON:0001137;4.88e-10;3!UBERON:0001896;7.10e-10;3!UBERON:0005290;7.10e-10;3!UBERON:0010314;5.21e-09;132!UBERON:0001876;4.52e-08;2!UBERON:0001954;6.22e-08;2!UBERON:0003022;6.22e-08;2!UBERON:0002421;6.22e-08;2!UBERON:0002600;6.22e-08;2!UBERON:0001873;6.99e-08;2!UBERON:0002702;1.75e-07;2!UBERON:0002771;2.16e-07;2!UBERON:0001897;2.49e-07;2!UBERON:0002148;2.49e-07;2!UBERON:0006331;2.49e-07;2!UBERON:0009662;2.49e-07;2!UBERON:0010225;2.49e-07;2!UBERON:0001875;4.00e-07;2!UBERON:0006514;4.00e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.72e-99,56;UBERON:0005068,6.72e-99,56;UBERON:0006241,6.72e-99,56;UBERON:0007135,6.72e-99,56;UBERON:0000073,1.85e-90,53;UBERON:0002616,1.85e-90,53;UBERON:0000955,1.53e-82,68;UBERON:0006238,1.53e-82,68;UBERON:0001017,8.50e-82,81;UBERON:0003075,2.41e-78,82;UBERON:0007284,2.41e-78,82;UBERON:0002346,3.38e-74,86;UBERON:00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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64218 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10729 | |||
|TSSclassifier=S | |||
|UniProt=Q5TCI6 | |||
|association_with_transcript=0bp_to_ENST00000435124_5end | |||
|coexpression_cluster_id=C3878 | |||
|description=CAGE_peak_3_at_SEMA4A_5end | |||
|id=chr1:156117149..156117176,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002586;4.81e-10;3!CL:0000149;1.24e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,3.86e-10,3;CL:0000149,1.06e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.92e-19;82!UBERON:0006241;4.88e-10;3!UBERON:0003057;4.88e-10;3!UBERON:0006215;1.24e-09;3!UBERON:0010122;6.99e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p3@SEMA4A | |||
}} |
Revision as of 00:51, 12 September 2013
Short description: | p3@SEMA4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SEMA4A_5end |
Coexpression cluster: | C3878_retina_temporal_amygdala_nucleus_putamen_insula_olfactory |
Association with transcript: | 0bp_to_ENST00000435124_5end |
EntrezGene: | SEMA4A |
HGNC: | 10729 |
UniProt: | Q5TCI6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 3.86e-10 | 3 |
visual pigment cell | 1.06e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.