FFCP PHASE1:Hg19::chr18:76739816..76739822,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27164 | |EntrezGene=27164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10527 | |HGNC=10527 | ||
|TSSclassifier=strong | |||
|UniProt=F5GXY4,Q9BXA9 | |UniProt=F5GXY4,Q9BXA9 | ||
|association_with_transcript=-452bp_to_ENST00000536229,ENST00000537592,ENST00000543056,NM_171999,uc002lmt.2_5end | |association_with_transcript=-452bp_to_ENST00000536229,ENST00000537592,ENST00000543056,NM_171999,uc002lmt.2_5end | ||
|cluster_id=chr18:76739816..76739822,+ | |||
|coexpression_cluster_id=C162 | |coexpression_cluster_id=C162 | ||
|description=CAGE_peak_1_at_SALL3_5end | |description=CAGE_peak_1_at_SALL3_5end | ||
|id=chr18:76739816..76739822,+ | |id=chr18:76739816..76739822,+ | ||
|ontology_enrichment_celltype=CL:0000540!3.00e-08!6;CL:0000031!3.00e-08!6;CL:0000404!3.00e-08!6;CL:0000047!3.81e-08!8;CL:0002322!1.99e-07!5;CL:0002319!6.86e-07!25 | |ontology_enrichment_celltype=CL:0000540!3.00e-08!6;CL:0000031!3.00e-08!6;CL:0000404!3.00e-08!6;CL:0000047!3.81e-08!8;CL:0002322!1.99e-07!5;CL:0002319!6.86e-07!25 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.11e-16;82!UBERON:0006241;3.26e-10;3!UBERON:0003057;3.26e-10;3!UBERON:0010122;5.41e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.60e-63!82;UBERON:0001049!1.46e-61!57;UBERON:0005068!1.46e-61!57;UBERON:0006241!1.46e-61!57;UBERON:0007135!1.46e-61!57;UBERON:0005743!5.83e-61!86;UBERON:0000073!1.59e-55!94;UBERON:0001016!1.59e-55!94;UBERON:0002616!1.96e-50!59;UBERON:0000955!1.21e-48!69;UBERON:0006238!1.21e-48!69;UBERON:0002780!1.64e-47!41;UBERON:0001890!1.64e-47!41;UBERON:0006240!1.64e-47!41;UBERON:0003080!4.38e-46!42;UBERON:0003075!1.28e-45!86;UBERON:0007284!1.28e-45!86;UBERON:0002020!5.27e-44!34;UBERON:0003528!5.27e-44!34;UBERON:0001893!6.38e-44!34;UBERON:0002346!9.31e-43!90;UBERON:0002791!1.84e-42!33;UBERON:0001869!6.74e-41!32;UBERON:0007023!3.02e-38!115;UBERON:0004121!2.03e-34!169;UBERON:0000924!4.32e-33!173;UBERON:0006601!4.32e-33!173;UBERON:0000956!1.41e-30!25;UBERON:0000203!1.41e-30!25;UBERON:0003056!1.86e-29!61;UBERON:0000033!1.42e-27!123;UBERON:0002619!2.20e-27!22;UBERON:0000153!1.85e-25!129;UBERON:0007811!1.85e-25!129;UBERON:0001950!2.30e-24!20;UBERON:0000025!7.16e-18!194;UBERON:0003076!6.07e-16!15;UBERON:0003057!6.07e-16!15;UBERON:0004111!7.36e-15!241;UBERON:0002308!7.62e-15!9;UBERON:0000125!7.62e-15!9;UBERON:0004732!6.72e-13!13;UBERON:0000064!2.59e-12!219;UBERON:0009663!8.27e-12!7;UBERON:0002420!1.26e-11!9;UBERON:0007245!1.26e-11!9;UBERON:0010009!1.26e-11!9;UBERON:0010011!1.26e-11!9;UBERON:0000454!1.26e-11!9;UBERON:0004733!2.16e-11!12;UBERON:0002028!2.16e-11!12;UBERON:0007277!2.16e-11!12;UBERON:0000477!5.03e-11!286;UBERON:0002298!2.79e-10!8;UBERON:0000200!8.35e-10!6;UBERON:0000483!9.18e-10!309;UBERON:0000922!9.29e-10!612;UBERON:0000119!1.74e-09!312;UBERON:0000062!1.83e-09!511;UBERON:0002021!1.24e-08!5;UBERON:0001872!2.38e-08!5;UBERON:0000468!1.15e-07!659;UBERON:0000369!1.57e-07!4;UBERON:0002435!1.57e-07!4;UBERON:0000204!1.57e-07!4;UBERON:0010082!1.57e-07!4;UBERON:0001871!2.41e-07!7;UBERON:0002050!2.66e-07!605;UBERON:0005423!2.66e-07!605;UBERON:0002680!3.04e-07!9;UBERON:0001895!3.04e-07!9;UBERON:0010092!3.04e-07!9;UBERON:0000467!6.10e-07!625;UBERON:0000923!6.17e-07!604;UBERON:0005291!6.17e-07!604;UBERON:0006598!6.17e-07!604;UBERON:0002532!6.17e-07!604;UBERON:0000480!6.97e-07!626 | |ontology_enrichment_uberon=UBERON:0001017!8.60e-63!82;UBERON:0001049!1.46e-61!57;UBERON:0005068!1.46e-61!57;UBERON:0006241!1.46e-61!57;UBERON:0007135!1.46e-61!57;UBERON:0005743!5.83e-61!86;UBERON:0000073!1.59e-55!94;UBERON:0001016!1.59e-55!94;UBERON:0002616!1.96e-50!59;UBERON:0000955!1.21e-48!69;UBERON:0006238!1.21e-48!69;UBERON:0002780!1.64e-47!41;UBERON:0001890!1.64e-47!41;UBERON:0006240!1.64e-47!41;UBERON:0003080!4.38e-46!42;UBERON:0003075!1.28e-45!86;UBERON:0007284!1.28e-45!86;UBERON:0002020!5.27e-44!34;UBERON:0003528!5.27e-44!34;UBERON:0001893!6.38e-44!34;UBERON:0002346!9.31e-43!90;UBERON:0002791!1.84e-42!33;UBERON:0001869!6.74e-41!32;UBERON:0007023!3.02e-38!115;UBERON:0004121!2.03e-34!169;UBERON:0000924!4.32e-33!173;UBERON:0006601!4.32e-33!173;UBERON:0000956!1.41e-30!25;UBERON:0000203!1.41e-30!25;UBERON:0003056!1.86e-29!61;UBERON:0000033!1.42e-27!123;UBERON:0002619!2.20e-27!22;UBERON:0000153!1.85e-25!129;UBERON:0007811!1.85e-25!129;UBERON:0001950!2.30e-24!20;UBERON:0000025!7.16e-18!194;UBERON:0003076!6.07e-16!15;UBERON:0003057!6.07e-16!15;UBERON:0004111!7.36e-15!241;UBERON:0002308!7.62e-15!9;UBERON:0000125!7.62e-15!9;UBERON:0004732!6.72e-13!13;UBERON:0000064!2.59e-12!219;UBERON:0009663!8.27e-12!7;UBERON:0002420!1.26e-11!9;UBERON:0007245!1.26e-11!9;UBERON:0010009!1.26e-11!9;UBERON:0010011!1.26e-11!9;UBERON:0000454!1.26e-11!9;UBERON:0004733!2.16e-11!12;UBERON:0002028!2.16e-11!12;UBERON:0007277!2.16e-11!12;UBERON:0000477!5.03e-11!286;UBERON:0002298!2.79e-10!8;UBERON:0000200!8.35e-10!6;UBERON:0000483!9.18e-10!309;UBERON:0000922!9.29e-10!612;UBERON:0000119!1.74e-09!312;UBERON:0000062!1.83e-09!511;UBERON:0002021!1.24e-08!5;UBERON:0001872!2.38e-08!5;UBERON:0000468!1.15e-07!659;UBERON:0000369!1.57e-07!4;UBERON:0002435!1.57e-07!4;UBERON:0000204!1.57e-07!4;UBERON:0010082!1.57e-07!4;UBERON:0001871!2.41e-07!7;UBERON:0002050!2.66e-07!605;UBERON:0005423!2.66e-07!605;UBERON:0002680!3.04e-07!9;UBERON:0001895!3.04e-07!9;UBERON:0010092!3.04e-07!9;UBERON:0000467!6.10e-07!625;UBERON:0000923!6.17e-07!604;UBERON:0005291!6.17e-07!604;UBERON:0006598!6.17e-07!604;UBERON:0002532!6.17e-07!604;UBERON:0000480!6.97e-07!626 | ||
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|short_description=p1@SALL3 | |short_description=p1@SALL3 | ||
}} | }} |
Latest revision as of 19:10, 24 September 2015
Short description: | p1@SALL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SALL3_5end |
Coexpression cluster: | C162_spinal_locus_medulla_substantia_thalamus_globus_diencephalon |
Association with transcript: | -452bp_to_ENST00000536229, ENST00000537592, ENST00000543056, NM_171999, uc002lmt.2_5end |
EntrezGene: | SALL3 |
HGNC: | 10527 |
UniProt: | F5GXY4Q9BXA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data