FFCP PHASE1:Hg19::chr14:60337478..60337544,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:60337478..60337544,- to FFCP PHASE1:Hg19::chr14:60337478..60337544,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6252 | |EntrezGene=6252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |HGNC=10467 | ||
|TSSclassifier=strong | |||
|UniProt=Q2NKQ5 | |UniProt=Q2NKQ5 | ||
|association_with_transcript=-8bp_to_ENST00000433623_5end | |||
|cluster_id=chr14:60337478..60337544,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_2_at_RTN1_5end | |||
|id=chr14:60337478..60337544,- | |||
|ontology_enrichment_celltype=CL:0002009!3.39e-15!65;CL:0002194!2.80e-14!63;CL:0000576!2.80e-14!63;CL:0000040!2.80e-14!63;CL:0000559!2.80e-14!63;CL:0000557!2.55e-13!71;CL:0002057!3.65e-13!42;CL:0000766!9.45e-13!76;CL:0000839!1.13e-11!70;CL:0000763!6.00e-11!112;CL:0000049!6.00e-11!112;CL:0000860!7.67e-11!45 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.17e-10;39!CL:0000234;2.17e-10;39!CL:0000576;8.23e-10;48!CL:0000860;1.71e-09;33!CL:0002057;1.71e-09;33!CL:0000766;1.15e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.88e-18,61;CL:0000473,1.54e-17,48;CL:0000234,1.54e-17,48;CL:0002194,2.28e-17,59;CL:0000576,2.28e-17,59;CL:0000040,2.28e-17,59;CL:0000559,2.28e-17,59;CL:0000557,1.29e-15,67;CL:0000766,3.27e-15,72;CL:0000860,9.15e-15,42;CL:0002057,9.15e-15,42;CL:0000839,2.88e-13,66;CL:0000763,1.25e-12,108;CL:0000049,1.25e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;8.41e-11;42!UBERON:0006601;6.97e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.01e-40!115;UBERON:0001017!6.98e-35!82;UBERON:0000073!1.88e-34!94;UBERON:0001016!1.88e-34!94;UBERON:0005743!2.77e-34!86;UBERON:0001049!4.01e-34!57;UBERON:0005068!4.01e-34!57;UBERON:0006241!4.01e-34!57;UBERON:0007135!4.01e-34!57;UBERON:0002616!1.97e-32!59;UBERON:0000955!2.13e-31!69;UBERON:0006238!2.13e-31!69;UBERON:0003075!4.14e-28!86;UBERON:0007284!4.14e-28!86;UBERON:0003080!2.36e-26!42;UBERON:0002780!7.02e-26!41;UBERON:0001890!7.02e-26!41;UBERON:0006240!7.02e-26!41;UBERON:0002346!5.10e-25!90;UBERON:0001893!2.69e-22!34;UBERON:0002020!3.40e-22!34;UBERON:0003528!3.40e-22!34;UBERON:0002791!1.35e-21!33;UBERON:0003056!1.72e-21!61;UBERON:0001869!4.57e-21!32;UBERON:0000033!8.94e-17!123;UBERON:0000956!1.07e-16!25;UBERON:0000203!1.07e-16!25;UBERON:0002619!5.34e-16!22;UBERON:0000153!5.65e-16!129;UBERON:0007811!5.65e-16!129;UBERON:0004121!1.70e-15!169;UBERON:0001950!7.77e-15!20;UBERON:0000924!4.16e-14!173;UBERON:0006601!4.16e-14!173;UBERON:0002390!1.04e-12!102;UBERON:0003061!1.04e-12!102;UBERON:0000922!2.67e-11!612;UBERON:0002050!4.42e-11!605;UBERON:0005423!4.42e-11!605;UBERON:0002193!6.31e-11!112;UBERON:0000923!6.58e-11!604;UBERON:0005291!6.58e-11!604;UBERON:0006598!6.58e-11!604;UBERON:0002532!6.58e-11!604;UBERON:0001474!1.11e-09!86;UBERON:0002371!1.98e-09!80;UBERON:0000025!2.82e-09!194;UBERON:0000479!6.39e-09!787;UBERON:0003076!7.65e-09!15;UBERON:0003057!7.65e-09!15;UBERON:0000467!2.44e-08!625;UBERON:0000468!2.53e-08!659;UBERON:0000480!2.81e-08!626;UBERON:0004732!6.68e-08!13;UBERON:0004733!3.24e-07!12;UBERON:0002028!3.24e-07!12;UBERON:0007277!3.24e-07!12;UBERON:0002420!4.01e-07!9;UBERON:0007245!4.01e-07!9;UBERON:0010009!4.01e-07!9;UBERON:0010011!4.01e-07!9;UBERON:0000454!4.01e-07!9;UBERON:0002308!5.97e-07!9;UBERON:0000125!5.97e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.11e-21;34!UBERON:0001869;1.35e-21;32!UBERON:0002791;1.52e-21;32!UBERON:0003528;1.61e-21;34!UBERON:0002020;1.61e-21;34!UBERON:0002780;3.64e-21;41!UBERON:0001890;3.64e-21;41!UBERON:0000073;1.53e-20;53!UBERON:0002616;1.53e-20;53!UBERON:0000956;8.55e-19;25!UBERON:0000203;8.55e-19;25!UBERON:0002619;5.27e-18;22!UBERON:0001950;1.12e-16;20!UBERON:0001017;6.59e-16;75!UBERON:0000955;1.56e-15;68!UBERON:0001016;1.94e-14;83!UBERON:0007023;1.66e-11;114!UBERON:0004732;9.57e-09;13!UBERON:0004733;5.73e-08;12!UBERON:0002028;5.73e-08;12!UBERON:0002420;6.61e-08;9!UBERON:0007245;6.61e-08;9!UBERON:0010009;6.61e-08;9!UBERON:0010011;6.61e-08;9!UBERON:0000454;6.61e-08;9!UBERON:0000125;1.04e-07;9!UBERON:0002308;1.04e-07;9 | |||
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|phase1_expression=0.54503513781167,0.642301571672949,0.563817616383885,10.007329835313,0,0,0,0.631719873426831,1.04474251279935,0.491467873003018,0,0,0.263766978228454,0,0,1.34465029290355,1.20538905604795,1.46062018077475,0.975865597581014,10.465289936527,8.56802903225863,7.8363680369522,11.4494394852423,13.5505680822155,9.54124060920501,0,0,0,18.4881210118985,7.29275856384704,23.6868668673596,0,0,0,0.0774672005803016,0,0.587200878669695,29.3617566521895,38.1034450193269,21.0500544594376,11.6436046604761,7.44955431843653,12.6212028140751,10.4686731921287,9.44689859222024,9.94594650870046,11.8538808821899,13.1573724166984,5.26500830521676,4.60307827715441,7.68482119587302,2.83778675866302,7.23965929546899,12.9096936716765,5.41705946377367,7.34145124216158,8.18718450173537,5.8428105955722,6.42776173978895,9.30694178520671,8.31138263538754,7.58657990429447,8.17800996248691,5.11469700639233,8.12585868160035,11.3477044938228,14.9477339758938,7.28621129244555,6.77927793946262,4.99534342821768,8.47559303686716,16.940771255428,8.54448446090388,52.1800557190496,33.5914793944769,49.6890989854851,59.6465031387889,38.4452845674256,47.8962248357299,21.6609685243349,19.6927510427099,19.7277286065805,0,0,0.889509253863555,3.41384178053206,0.400395987036012,2.29900975981793,1.32208974556972,0,0,0,0.764546456250458,1.32171328579026,1.68152568894461,1.84368859342554,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,1.59282707162048,0.651083453856419,0,3.16207750063323,2.30375900077953,3.74792179657038,3.31488152861624,0,0,0,0,0,0,0.383587685530591,0.722878304769133,0,0.289693037921647,0,0,2.74150969775797,1.99556457716308,4.0404001418838,23.0523172875974,0,0,9.08732702233113,8.70648686496336,19.9436940778298,1.19245312152671,1.71598473234038,0.371457501329565,1.39133685156694,0,0.694281003215189,5.08777147731609,1.67799774483962,2.20094433552054,1.46296476575767,0.258416759169329,0,0,0.805658634218294,0,0,1.10298924103761,3.24056779152704,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,2.27934920996244,0.662045904066094,0,2.83734705758686,2.80338800071154,0,0.24666754841716,0.311211035399766,0,0.490385709340376,32.995919226595,35.1467313932799,1.17160715916898,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0,0,0,0.910161361938026,7.18618141816238,0.336672227908132,0.250237039743928,0,0,0,0.45071417671979,0.340296549480063,0.179389635688862,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0.168776332241266,0,0,0,0.161646056818812,0.355009592516614,0,0.169560592310488,0,0,0,0.731842236777572,0.530119073285941,0.580969714347592,0.829288440122964,0,0.72995471815166,7.8224766164908,23.7999147131368,5.52539685409922,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,2.8810180793198,0,0,0.982827216677626,4.72631925345123,0,0,14.0685604444791,0,0,0,0.0925884451585296,0.977424915930974,3.11980435583874,0,7.65140672835507,6.10525210026273,0,0,0,0.790204397959275,0,13.2957183287195,53.5869767168854,54.3990053976745,0,0,0,0,0,0,0,0,0.414656231081544,0.288239906833923,0.37872730027914,0.063497894292169,0,0,0,0,0,0,0.336393253036082,0,0.22001485746285,36.4546238436933,0,0.845302752556,0,1.04007436911366,0,0,0,3.71742783511184,37.4408907720096,46.9246991965038,0.65147236858747,5.68627117988073,25.3424599338697,3.61727252471503,0,3.89894665610022,15.8110914833548,13.5609414686674,21.0833939483032,0,0,0,3.61953266668948,16.2326294814803,3.76028022803781,0,1.57624608161542,0.215627574859517,2.05348858047597,134.416056213683,152.263629013417,15.4657762555539,35.8484807815506,12.1208362814101,6.74106321552464,20.9413021442817,7.45947924184864,0.12269149171914,0,0,1.66376689224646,8.20773348466944,9.77754973210395,5.85707074963566,0,0,0,0,0.184369168541703,0.173767228936166,1.17480694477644,1.71571711905428,16.9549781420768,24.8071330941409,25.2944311994163,0,0,0,0.496215615637554,0.61384789315225,0.561320188866147,0,6.14048698880044,1.12597744800525,2.96836132889982,0.154209693802656,0.177561725313127,0.328508624055237,1.55776328755086,0.581051892299796,0,0,0,3.09999010044438,0,0.393373244878272,0.451199612907412,0.15403067420883,0.784349769176855,0,0.105551628892876,0,0.850468526382578,0.431831832204279,0,0.812839312631559,0,0,0,0.223874754722178,0.219259876645935,0.261435451024901,1.28225062558195,0.656029291399411,0.650756789328606,2.47298427954533,7.14241825583079,7.09581699317057,0,0,3.21367859688319,0,0,0,0.413509717453592,0.107420244868274,0.145016693914229,0.340906509664404,0.356128142586949,0,0,0,0,0,3.77774816196768,1.3940745403212,0.308033580176089,0.532306030317022,0.869932992075073,1.11194531462352,0.572499546967965,0.744316738719335,0.316379424718726,10.2940304718865,2.55897791311334,0,2.54562598340749,0.78494864019923,0.539617372749944,3.29444435683266,2.00281083987667,0.606547444719948,3.17020642346017,0,0.975267478179181,4.6305563029944,13.7345190783782,0.545999645631943,7.07027159768564,19.2113798254413,6.61638412255349,0,1.31535265576129,0,0.65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| ||
|short_description=p2@RTN1 | |||
}} | }} |
Latest revision as of 20:11, 24 September 2015
Short description: | p2@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RTN1_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -8bp_to_ENST00000433623_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q2NKQ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.88e-18 | 61 |
defensive cell | 1.54e-17 | 48 |
phagocyte | 1.54e-17 | 48 |
monopoietic cell | 2.28e-17 | 59 |
monocyte | 2.28e-17 | 59 |
monoblast | 2.28e-17 | 59 |
promonocyte | 2.28e-17 | 59 |
granulocyte monocyte progenitor cell | 1.29e-15 | 67 |
myeloid leukocyte | 3.27e-15 | 72 |
classical monocyte | 9.15e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.15e-15 | 42 |
myeloid lineage restricted progenitor cell | 2.88e-13 | 66 |
myeloid cell | 1.25e-12 | 108 |
common myeloid progenitor | 1.25e-12 | 108 |