FFCP PHASE1:Hg19::chr12:75603482..75603534,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3747 | |EntrezGene=3747 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6234 | |HGNC=6234 | ||
|TSSclassifier=strong | |||
|UniProt=Q96PR1 | |UniProt=Q96PR1 | ||
|association_with_transcript=0bp_to_ENST00000298972,ENST00000341669,ENST00000350228,NM_139136,NM_139137,NM_153748,uc001sxe.2,uc001sxf.2,uc001sxg.1,uc010stw.1_5end | |association_with_transcript=0bp_to_ENST00000298972,ENST00000341669,ENST00000350228,NM_139136,NM_139137,NM_153748,uc001sxe.2,uc001sxf.2,uc001sxg.1,uc010stw.1_5end | ||
|cluster_id=chr12:75603482..75603534,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_KCNC2_5end | |description=CAGE_peak_1_at_KCNC2_5end | ||
|id=chr12:75603482..75603534,- | |id=chr12:75603482..75603534,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.21e-20;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.40e-81!82;UBERON:0001049!6.11e-81!57;UBERON:0005068!6.11e-81!57;UBERON:0006241!6.11e-81!57;UBERON:0007135!6.11e-81!57;UBERON:0005743!2.41e-80!86;UBERON:0000073!2.25e-74!94;UBERON:0001016!2.25e-74!94;UBERON:0000955!1.11e-70!69;UBERON:0006238!1.11e-70!69;UBERON:0002780!1.73e-68!41;UBERON:0001890!1.73e-68!41;UBERON:0006240!1.73e-68!41;UBERON:0002616!4.23e-67!59;UBERON:0003080!1.17e-66!42;UBERON:0001893!2.52e-60!34;UBERON:0003075!3.15e-60!86;UBERON:0007284!3.15e-60!86;UBERON:0001869!4.90e-60!32;UBERON:0002020!6.28e-60!34;UBERON:0003528!6.28e-60!34;UBERON:0002791!1.19e-57!33;UBERON:0002346!5.40e-57!90;UBERON:0002619!1.76e-55!22;UBERON:0001950!1.72e-50!20;UBERON:0003056!1.49e-48!61;UBERON:0000956!2.70e-48!25;UBERON:0000203!2.70e-48!25;UBERON:0007023!2.19e-46!115;UBERON:0000033!5.01e-42!123;UBERON:0004121!2.61e-40!169;UBERON:0000153!1.77e-39!129;UBERON:0007811!1.77e-39!129;UBERON:0000924!4.73e-39!173;UBERON:0006601!4.73e-39!173;UBERON:0000025!8.05e-22!194;UBERON:0004111!1.07e-18!241;UBERON:0000200!1.76e-17!6;UBERON:0001871!7.55e-17!7;UBERON:0000477!2.67e-15!286;UBERON:0003076!3.10e-15!15;UBERON:0003057!3.10e-15!15;UBERON:0001872!1.75e-14!5;UBERON:0002021!1.90e-14!5;UBERON:0000349!4.52e-14!5;UBERON:0002420!2.25e-13!9;UBERON:0007245!2.25e-13!9;UBERON:0010009!2.25e-13!9;UBERON:0010011!2.25e-13!9;UBERON:0000454!2.25e-13!9;UBERON:0000483!3.41e-13!309;UBERON:0000475!4.03e-13!365;UBERON:0002308!4.79e-13!9;UBERON:0000125!4.79e-13!9;UBERON:0000119!6.17e-13!312;UBERON:0002298!1.82e-11!8;UBERON:0000064!1.87e-11!219;UBERON:0000369!1.21e-10!4;UBERON:0002435!1.21e-10!4;UBERON:0000204!1.21e-10!4;UBERON:0010082!1.21e-10!4;UBERON:0004733!1.00e-09!12;UBERON:0002028!1.00e-09!12;UBERON:0007277!1.00e-09!12;UBERON:0001894!1.52e-09!7;UBERON:0006222!1.52e-09!7;UBERON:0002771!1.94e-09!3;UBERON:0000062!2.38e-09!511;UBERON:0009663!6.80e-09!7;UBERON:0004732!6.82e-09!13;UBERON:0000988!9.32e-09!3;UBERON:0001896!1.79e-08!3;UBERON:0005290!1.79e-08!3;UBERON:0010096!1.79e-08!3;UBERON:0000481!2.69e-08!347;UBERON:0002240!3.58e-08!3;UBERON:0005383!4.28e-08!3;UBERON:0005382!4.28e-08!3;UBERON:0000922!1.14e-07!612;UBERON:0000923!2.06e-07!604;UBERON:0005291!2.06e-07!604;UBERON:0006598!2.06e-07!604;UBERON:0002532!2.06e-07!604;UBERON:0002050!2.25e-07!605;UBERON:0005423!2.25e-07!605;UBERON:0000467!3.73e-07!625;UBERON:0000480!4.08e-07!626;UBERON:0001870!4.49e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.30e-73;22!UBERON:0001950;1.38e-66;20!UBERON:0000956;4.58e-64;25!UBERON:0000203;4.58e-64;25!UBERON:0001869;8.12e-62;32!UBERON:0001893;1.15e-61;34!UBERON:0003528;8.76e-61;34!UBERON:0002020;8.76e-61;34!UBERON:0002791;2.91e-57;32!UBERON:0002780;4.02e-56;41!UBERON:0001890;4.02e-56;41!UBERON:0000073;1.75e-49;53!UBERON:0002616;1.75e-49;53!UBERON:0001017;1.66e-33;75!UBERON:0000955;6.43e-33;68!UBERON:0001016;4.36e-26;83!UBERON:0000200;1.20e-22;6!UBERON:0002298;4.88e-20;6!UBERON:0001872;1.21e-18;5!UBERON:0002021;1.37e-18;5!UBERON:0001871;1.38e-18;6!UBERON:0000349;4.24e-18;5!UBERON:0007023;2.23e-13;114!UBERON:0001894;2.49e-12;7!UBERON:0001870;2.59e-12;3!UBERON:0011216;2.29e-11;132!UBERON:0000988;4.07e-11;3!UBERON:0001896;1.19e-10;3!UBERON:0005290;1.19e-10;3!UBERON:0004733;1.05e-09;12!UBERON:0002028;1.05e-09;12!UBERON:0002420;1.35e-09;9!UBERON:0007245;1.35e-09;9!UBERON:0010009;1.35e-09;9!UBERON:0010011;1.35e-09;9!UBERON:0000454;1.35e-09;9!UBERON:0000125;2.63e-09;9!UBERON:0002308;2.63e-09;9!UBERON:0004732;6.54e-09;13!UBERON:0002702;1.13e-08;2!UBERON:0002771;1.52e-08;2!UBERON:0000369;2.42e-08;4!UBERON:0002435;2.42e-08;4!UBERON:0000204;2.42e-08;4!UBERON:0001876;3.04e-08;2!UBERON:0001954;3.64e-08;2!UBERON:0003022;3.64e-08;2!UBERON:0002421;3.64e-08;2!UBERON:0002600;3.64e-08;2!UBERON:0000007;4.43e-08;2!UBERON:0010314;4.86e-08;132!UBERON:0001897;8.06e-08;2!UBERON:0010225;8.06e-08;2!UBERON:0002148;1.08e-07;2!UBERON:0006331;1.08e-07;2!UBERON:0009662;1.08e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.82e-92,56;UBERON:0005068,6.82e-92,56;UBERON:0006241,6.82e-92,56;UBERON:0007135,6.82e-92,56;UBERON:0000073,7.10e-88,53;UBERON:0002616,7.10e-88,53;UBERON:0002780,2.12e-81,41;UBERON:0001890,2.12e-81,41;UBERON:0003080,2.12e-81,41;UBERON:0006240,2.12e-81,41;UBERON:0001017,6.57e-78,81;UBERON:0000955,1.08e-77,68;UBERON:0006238,1.08e-77,68;UBERON:0002619,3.25e-73,22;UBERON:0001016,1.76e-72,89;UBERON:0001893,3.80e-70,34;UBERON:0003528,1.19e-69,34;UBERON:0002020,1.19e-69,34;UBERON:0001869,2.13e-69,32;UBERON:0001950,1.38e-66,20;UBERON:0000956,4.52e-64,25;UBERON:0000203,4.52e-64,25;UBERON:0002791,1.02e-63,32;UBERON:0003075,3.28e-63,82;UBERON:0007284,3.28e-63,82;UBERON:0002346,7.62e-60,86;UBERON:0003056,7.86e-56,61;UBERON:0010371,1.96e-50,104;UBERON:0007023,3.08e-41,114;UBERON:0010314,6.95e-40,132;UBERON:0004121,1.39e-38,171;UBERON:0000924,1.39e-38,171;UBERON:0006601,1.39e-38,171;UBERON:0011216,1.31e-31,223;UBERON:0000025,6.73e-23,192;UBERON:0000200,1.27e-22,6;UBERON:0002298,4.72e-20,6;UBERON:0001872,1.19e-18,5;UBERON:0002021,1.32e-18,5;UBERON:0001871,1.41e-18,6;UBERON:0000349,4.17e-18,5;UBERON:0004111,2.15e-17,240;UBERON:0003076,3.37e-13,15;UBERON:0003057,3.37e-13,15;UBERON:0001894,2.43e-12,7;UBERON:0006222,2.43e-12,7;UBERON:0000483,2.56e-12,306;UBERON:0001870,2.69e-12,3;UBERON:0000119,4.22e-12,309;UBERON:0000988,4.44e-11,3;UBERON:0001896,1.05e-10,3;UBERON:0005290,1.05e-10,3;UBERON:0010096,1.05e-10,3;UBERON:0004733,1.03e-09,12;UBERON:0002028,1.03e-09,12;UBERON:0007277,1.03e-09,12;UBERON:0002420,1.46e-09,9;UBERON:0007245,1.46e-09,9;UBERON:0010009,1.46e-09,9;UBERON:0010011,1.46e-09,9;UBERON:0000454,1.46e-09,9;UBERON:0000125,2.99e-09,9;UBERON:0002308,2.99e-09,9;UBERON:0004732,6.44e-09,13;UBERON:0002702,1.15e-08,2;UBERON:0002771,1.55e-08,2;UBERON:0000369,2.71e-08,4;UBERON:0002435,2.71e-08,4;UBERON:0000204,2.71e-08,4;UBERON:0010082,2.71e-08,4;UBERON:0001876,2.99e-08,2;UBERON:0001954,3.57e-08,2;UBERON:0003022,3.57e-08,2;UBERON:0002421,3.57e-08,2;UBERON:0002600,3.57e-08,2;UBERON:0000007,4.43e-08,2;UBERON:0001897,7.78e-08,2;UBERON:0010225,7.78e-08,2;UBERON:0002148,1.18e-07,2;UBERON:0006331,1.18e-07,2;UBERON:0009662,1.18e-07,2;UBERON:0000923,5.68e-07,560;UBERON:0010316,5.68e-07,560;UBERON:0005291,5.68e-07,560;UBERON:0006598,5.68e-07,560;UBERON:0010317,5.68e-07,560;UBERON:0002532,5.68e-07,560;UBERON:0002050,7.71e-07,564 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6497571801688,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.8946576597934,16.8803299692615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.9266461133326,25.5112269945091,11.9768278800717,0,0,0,0,0,0,6.89486746482929,0,0,2.65722415744152,0.482385754501632,0,0.221158519862449,0,17.5508317723178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03305098413047,0,9.37057782901357,0,0,0,0.394584402849391,0,6.42752799424029,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,2.71176888936639,0,0,40.5189094117624,0,0,0,0,0,0,1.02956998717179,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.6759719350419,7.08257711780193,0,0,0,0,0,39.9124587243222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58565912723101,4.23144325576608,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,35.4427271986794,30.1404874307849,25.0381861413,2.86704597845036,2.99508439149501,4.09836259413131,0.276697269872462,0,0,0,0,0,1.88397337194073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.0152822950631,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,1.02315497042921,0,0,0,0,0,0,0,0,0,8.0057074828547,0,0,23.058291809629,31.1732467916287,12.1321732883435,21.5372182452793,12.8556565073076,37.3449163306777,23.5754442622503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.496423232485,28.8998896487124,20.6686796501184,36.3372592411086,4.92277328116398,0,0,0,0,0,0,10.3184152720227,10.700122993511,0,0,0,24.6050433376131,37.1616170630097,0,0,0.313972371402056,2.04250266890802,0,2.73947616152849,0,0,1.85839014859306,0.316027223465453,0,0,0,0.207216164163037,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97892930141772,0.754814217833368,0,0,0,0,0,1.57046773691956,0.891139200981258,3.3812458206672,0,0,0.128915775947154,0,0,0,0,0,0,0,0,40.7269026243579,6.98161104544604,0,0,0,0,0,0,0,0,0,0,0,0,0,18.2417276680931,1.75836092965222,0,0,0,0,0,0,0,0,1.36893320434112,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6497571801688,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.8946576597934,16.8803299692615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.9266461133326,25.5112269945091,11.9768278800717,0,0,0,0,0,0,6.89486746482929,0,0,2.65722415744152,0.482385754501632,0,0.221158519862449,0,17.5508317723178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03305098413047,0,9.37057782901357,0,0,0,0.394584402849391,0,6.42752799424029,0.568679216656392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,2.71176888936639,0,0,40.5189094117624,0,0,0,0,0,0,1.02956998717179,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.6759719350419,7.08257711780193,0,0,0,0,0,39.9124587243222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58565912723101,4.23144325576608,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,35.4427271986794,30.1404874307849,25.0381861413,2.86704597845036,2.99508439149501,4.09836259413131,0.276697269872462,0,0,0,0,0,1.88397337194073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.0152822950631,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,1.02315497042921,0,0,0,0,0,0,0,0,0,8.0057074828547,0,0,23.058291809629,31.1732467916287,12.1321732883435,21.5372182452793,12.8556565073076,37.3449163306777,23.5754442622503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.496423232485,28.8998896487124,20.6686796501184,36.3372592411086,4.92277328116398,0,0,0,0,0,0,10.3184152720227,10.700122993511,0,0,0,24.6050433376131,37.1616170630097,0,0,0.313972371402056,2.04250266890802,0,2.73947616152849,0,0,1.85839014859306,0.316027223465453,0,0,0,0.207216164163037,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97892930141772,0.754814217833368,0,0,0,0,0,1.57046773691956,0.891139200981258,3.3812458206672,0,0,0.128915775947154,0,0,0,0,0,0,0,0,40.7269026243579,6.98161104544604,0,0,0,0,0,0,0,0,0,0,0,0,0,18.2417276680931,1.75836092965222,0,0,0,0,0,0,0,0,1.36893320434112,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p1@KCNC2 | |short_description=p1@KCNC2 | ||
}} | }} |
Latest revision as of 19:31, 24 September 2015
Short description: | p1@KCNC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KCNC2_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000298972, ENST00000341669, ENST00000350228, NM_139136, NM_139137, NM_153748, uc001sxe.2, uc001sxf.2, uc001sxg.1, uc010stw.1_5end |
EntrezGene: | KCNC2 |
HGNC: | 6234 |
UniProt: | Q96PR1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data