Personal tools

FF:10157-103A4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 69: Line 69:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.21992222522422e-276!GO:0005737;cytoplasm;5.08850574203335e-143!GO:0043226;organelle;6.62645360068471e-102!GO:0043229;intracellular organelle;2.45935695598504e-101!GO:0043227;membrane-bound organelle;1.34851743053192e-94!GO:0043231;intracellular membrane-bound organelle;2.34138799033304e-94!GO:0044444;cytoplasmic part;1.64362078019306e-86!GO:0005515;protein binding;1.39044076941298e-70!GO:0044422;organelle part;7.27327913253785e-60!GO:0044446;intracellular organelle part;6.49583590311412e-59!GO:0032991;macromolecular complex;5.02205669317341e-58!GO:0016043;cellular component organization and biogenesis;5.32681114786341e-46!GO:0003723;RNA binding;7.37873076330159e-37!GO:0005739;mitochondrion;3.47300655417363e-36!GO:0033036;macromolecule localization;1.26374734741257e-35!GO:0030529;ribonucleoprotein complex;5.05890335128443e-35!GO:0015031;protein transport;4.23730265939009e-34!GO:0043234;protein complex;1.98991562187336e-33!GO:0008104;protein localization;3.62092193124956e-32!GO:0043233;organelle lumen;2.51012217107561e-31!GO:0031974;membrane-enclosed lumen;2.51012217107561e-31!GO:0044428;nuclear part;3.173419789854e-31!GO:0045184;establishment of protein localization;4.331432265319e-31!GO:0031090;organelle membrane;8.96310591779762e-31!GO:0046907;intracellular transport;1.43147516957155e-28!GO:0005634;nucleus;2.49165830247232e-28!GO:0051649;establishment of cellular localization;2.3943455952902e-27!GO:0051641;cellular localization;6.01383215524877e-27!GO:0044429;mitochondrial part;6.43314149606269e-27!GO:0016071;mRNA metabolic process;7.28884220966881e-27!GO:0043170;macromolecule metabolic process;1.3295948597377e-26!GO:0044238;primary metabolic process;2.27564654208195e-26!GO:0016192;vesicle-mediated transport;3.34076843536896e-26!GO:0006396;RNA processing;6.1316462420755e-25!GO:0044237;cellular metabolic process;6.44535556145392e-25!GO:0008380;RNA splicing;4.33131917057225e-24!GO:0031975;envelope;1.04642955202266e-23!GO:0031967;organelle envelope;1.43136660725722e-23!GO:0019538;protein metabolic process;2.14493194597037e-23!GO:0006397;mRNA processing;2.76678374198622e-22!GO:0005829;cytosol;8.20515403619816e-22!GO:0006996;organelle organization and biogenesis;1.19270824330541e-20!GO:0006886;intracellular protein transport;2.06995262314932e-20!GO:0044260;cellular macromolecule metabolic process;2.28723082213245e-20!GO:0006119;oxidative phosphorylation;5.74254417662404e-20!GO:0044267;cellular protein metabolic process;8.92953199637878e-20!GO:0031981;nuclear lumen;2.68834399917494e-19!GO:0005740;mitochondrial envelope;5.06457162335543e-19!GO:0043283;biopolymer metabolic process;1.03061031021428e-18!GO:0031966;mitochondrial membrane;1.05680783219899e-18!GO:0000166;nucleotide binding;2.08689392182726e-18!GO:0005794;Golgi apparatus;4.28048906362375e-18!GO:0031982;vesicle;4.68094889151781e-18!GO:0031410;cytoplasmic vesicle;3.63322487935739e-17!GO:0019866;organelle inner membrane;4.85607314377671e-17!GO:0005840;ribosome;1.44587313789379e-16!GO:0005743;mitochondrial inner membrane;2.07545127699871e-16!GO:0005681;spliceosome;3.06913451461469e-16!GO:0031988;membrane-bound vesicle;4.13177576549004e-16!GO:0065003;macromolecular complex assembly;9.16018060058138e-16!GO:0044455;mitochondrial membrane part;2.09207891573225e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.20853830168598e-15!GO:0016023;cytoplasmic membrane-bound vesicle;2.39178372783636e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;2.71542742830629e-15!GO:0016462;pyrophosphatase activity;2.77130278671154e-15!GO:0006512;ubiquitin cycle;4.7269749010297e-15!GO:0017111;nucleoside-triphosphatase activity;1.61436328540903e-14!GO:0043412;biopolymer modification;2.15906336542734e-14!GO:0043687;post-translational protein modification;3.64342776599357e-14!GO:0006412;translation;4.43835175820483e-14!GO:0032553;ribonucleotide binding;4.53797633404825e-14!GO:0032555;purine ribonucleotide binding;4.53797633404825e-14!GO:0005746;mitochondrial respiratory chain;4.90847922361548e-14!GO:0022607;cellular component assembly;5.37148969188198e-14!GO:0006464;protein modification process;1.57548233710013e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.01219664510312e-13!GO:0003954;NADH dehydrogenase activity;2.01219664510312e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.01219664510312e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.45365698896361e-13!GO:0045045;secretory pathway;4.2224094373124e-13!GO:0017076;purine nucleotide binding;4.71346973365209e-13!GO:0005654;nucleoplasm;7.54523419549896e-13!GO:0010467;gene expression;1.16685003218769e-12!GO:0030695;GTPase regulator activity;1.44280142846767e-12!GO:0003735;structural constituent of ribosome;1.97291794816986e-12!GO:0016874;ligase activity;3.18482874399734e-12!GO:0006457;protein folding;3.2389956056946e-12!GO:0007264;small GTPase mediated signal transduction;4.50395340193719e-12!GO:0044451;nucleoplasm part;8.52278845465295e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.72793554176471e-11!GO:0045271;respiratory chain complex I;1.72793554176471e-11!GO:0005747;mitochondrial respiratory chain complex I;1.72793554176471e-11!GO:0005083;small GTPase regulator activity;2.52999131947132e-11!GO:0006793;phosphorus metabolic process;3.15323274174576e-11!GO:0006796;phosphate metabolic process;3.15323274174576e-11!GO:0048770;pigment granule;3.29952592139358e-11!GO:0042470;melanosome;3.29952592139358e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.95764080286918e-11!GO:0042773;ATP synthesis coupled electron transport;3.95764080286918e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.15969697727955e-11!GO:0012505;endomembrane system;5.29913778216296e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.28218539937318e-11!GO:0048193;Golgi vesicle transport;7.28780251057162e-11!GO:0008134;transcription factor binding;7.38606724458064e-11!GO:0033279;ribosomal subunit;8.75585642815916e-11!GO:0043228;non-membrane-bound organelle;9.1821293037871e-11!GO:0043232;intracellular non-membrane-bound organelle;9.1821293037871e-11!GO:0008092;cytoskeletal protein binding;1.00107784078778e-10!GO:0030135;coated vesicle;1.61816303344062e-10!GO:0031980;mitochondrial lumen;2.6508339138696e-10!GO:0005759;mitochondrial matrix;2.6508339138696e-10!GO:0009058;biosynthetic process;4.32489953426935e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;6.92808824084364e-10!GO:0006511;ubiquitin-dependent protein catabolic process;7.30815172689367e-10!GO:0006810;transport;8.6069631084644e-10!GO:0019829;cation-transporting ATPase activity;1.02263354576574e-09!GO:0022618;protein-RNA complex assembly;1.03964272968851e-09!GO:0019941;modification-dependent protein catabolic process;1.09793178910505e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.09793178910505e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.14556160342644e-09!GO:0051082;unfolded protein binding;1.24273886117101e-09!GO:0009059;macromolecule biosynthetic process;1.48810478905816e-09!GO:0044257;cellular protein catabolic process;1.54611710929278e-09!GO:0003924;GTPase activity;2.28871849082129e-09!GO:0007010;cytoskeleton organization and biogenesis;3.14856994665889e-09!GO:0005768;endosome;3.14856994665889e-09!GO:0044265;cellular macromolecule catabolic process;3.4302737983971e-09!GO:0007399;nervous system development;4.29280832145197e-09!GO:0016604;nuclear body;4.5788629981977e-09!GO:0006605;protein targeting;7.20499462918415e-09!GO:0032940;secretion by cell;7.39713598115453e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.90804325932032e-09!GO:0044249;cellular biosynthetic process;8.44365033269007e-09!GO:0032559;adenyl ribonucleotide binding;9.48910714613198e-09!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.03707657319255e-08!GO:0043285;biopolymer catabolic process;1.08702903257458e-08!GO:0008565;protein transporter activity;1.09119215663841e-08!GO:0000502;proteasome complex (sensu Eukaryota);1.42258163139214e-08!GO:0044445;cytosolic part;1.53139700544224e-08!GO:0016607;nuclear speck;1.95332252030207e-08!GO:0016044;membrane organization and biogenesis;1.98970878208549e-08!GO:0008639;small protein conjugating enzyme activity;1.98993115913082e-08!GO:0008135;translation factor activity, nucleic acid binding;2.01440084664556e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.09126523225603e-08!GO:0043005;neuron projection;2.1075271261794e-08!GO:0016310;phosphorylation;2.42164919756387e-08!GO:0004842;ubiquitin-protein ligase activity;2.97904118759043e-08!GO:0005524;ATP binding;3.51064126387943e-08!GO:0044431;Golgi apparatus part;3.80224054558917e-08!GO:0051179;localization;4.39061961395373e-08!GO:0005525;GTP binding;4.42939775729379e-08!GO:0015986;ATP synthesis coupled proton transport;4.62911726991383e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.62911726991383e-08!GO:0019899;enzyme binding;5.37501717857661e-08!GO:0019787;small conjugating protein ligase activity;5.89079530942476e-08!GO:0030554;adenyl nucleotide binding;7.62552033428958e-08!GO:0051234;establishment of localization;8.23836024519646e-08!GO:0030163;protein catabolic process;9.91109664700357e-08!GO:0015630;microtubule cytoskeleton;1.22176374202052e-07!GO:0019717;synaptosome;1.24363505559601e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.50351732539051e-07!GO:0030136;clathrin-coated vesicle;2.30353038836908e-07!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.92126773834382e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.92126773834382e-07!GO:0000375;RNA splicing, via transesterification reactions;2.92126773834382e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.92126773834382e-07!GO:0006461;protein complex assembly;2.93636965720625e-07!GO:0008287;protein serine/threonine phosphatase complex;3.31234681206601e-07!GO:0009057;macromolecule catabolic process;4.11606301157519e-07!GO:0007242;intracellular signaling cascade;4.37329041644921e-07!GO:0015631;tubulin binding;5.42098271639286e-07!GO:0044248;cellular catabolic process;7.50904348023974e-07!GO:0006446;regulation of translational initiation;7.50904348023974e-07!GO:0046034;ATP metabolic process;8.33196430063179e-07!GO:0030029;actin filament-based process;8.44847693606483e-07!GO:0048523;negative regulation of cellular process;9.99114060659219e-07!GO:0032561;guanyl ribonucleotide binding;1.13779952406973e-06!GO:0019001;guanyl nucleotide binding;1.13779952406973e-06!GO:0015935;small ribosomal subunit;1.16649827560276e-06!GO:0016070;RNA metabolic process;1.37154173077698e-06!GO:0006913;nucleocytoplasmic transport;1.42517702450272e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.49320587353072e-06!GO:0006754;ATP biosynthetic process;1.62589378643668e-06!GO:0006753;nucleoside phosphate metabolic process;1.62589378643668e-06!GO:0016887;ATPase activity;1.67178932815311e-06!GO:0048471;perinuclear region of cytoplasm;1.87628627923128e-06!GO:0003712;transcription cofactor activity;1.87628627923128e-06!GO:0016881;acid-amino acid ligase activity;1.87628627923128e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.88704069758161e-06!GO:0051169;nuclear transport;2.14750649011597e-06!GO:0031252;leading edge;2.29818093298905e-06!GO:0042623;ATPase activity, coupled;2.37491501535386e-06!GO:0007265;Ras protein signal transduction;2.41237493468706e-06!GO:0051186;cofactor metabolic process;2.88110838022595e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.16493213904847e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.16493213904847e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.20178151347619e-06!GO:0000139;Golgi membrane;3.34445710585517e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.63179171076749e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.65459501111229e-06!GO:0006413;translational initiation;3.65459501111229e-06!GO:0044440;endosomal part;3.90500473712115e-06!GO:0010008;endosome membrane;3.90500473712115e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.97276109423643e-06!GO:0005730;nucleolus;3.98023428802561e-06!GO:0009060;aerobic respiration;4.01517474238798e-06!GO:0003743;translation initiation factor activity;4.16189556495153e-06!GO:0008047;enzyme activator activity;4.19016701707226e-06!GO:0048475;coated membrane;4.52990469377621e-06!GO:0030117;membrane coat;4.52990469377621e-06!GO:0009141;nucleoside triphosphate metabolic process;4.66795988671358e-06!GO:0031965;nuclear membrane;4.97124827193277e-06!GO:0003779;actin binding;5.13254321721322e-06!GO:0005096;GTPase activator activity;5.13254321721322e-06!GO:0005874;microtubule;6.3200659701269e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.59699309825661e-06!GO:0009150;purine ribonucleotide metabolic process;6.84077954626458e-06!GO:0006163;purine nucleotide metabolic process;7.02114718685079e-06!GO:0051056;regulation of small GTPase mediated signal transduction;7.21426344955644e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.96246009655517e-06!GO:0005783;endoplasmic reticulum;8.12311093365934e-06!GO:0045333;cellular respiration;8.43134589495904e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.65405517597746e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.65405517597746e-06!GO:0009152;purine ribonucleotide biosynthetic process;9.71315611794995e-06!GO:0006164;purine nucleotide biosynthetic process;1.05333330927526e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.13080891846533e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.13080891846533e-05!GO:0009259;ribonucleotide metabolic process;1.24552877913946e-05!GO:0032446;protein modification by small protein conjugation;1.29577437834457e-05!GO:0005635;nuclear envelope;1.31373037007566e-05!GO:0006897;endocytosis;1.82710018787023e-05!GO:0010324;membrane invagination;1.82710018787023e-05!GO:0048519;negative regulation of biological process;1.89733705780128e-05!GO:0016568;chromatin modification;2.22392637825878e-05!GO:0005905;coated pit;2.32142066417955e-05!GO:0045259;proton-transporting ATP synthase complex;2.33194279585304e-05!GO:0006323;DNA packaging;2.39014203171156e-05!GO:0016564;transcription repressor activity;2.66885279026522e-05!GO:0005761;mitochondrial ribosome;2.67788593704374e-05!GO:0000313;organellar ribosome;2.67788593704374e-05!GO:0016567;protein ubiquitination;2.72253870597509e-05!GO:0005769;early endosome;2.94084968986233e-05!GO:0005770;late endosome;3.30432256877275e-05!GO:0051128;regulation of cellular component organization and biogenesis;3.32981126851807e-05!GO:0009260;ribonucleotide biosynthetic process;3.80464142738626e-05!GO:0009055;electron carrier activity;4.16054605940243e-05!GO:0045786;negative regulation of progression through cell cycle;4.76080585115382e-05!GO:0008017;microtubule binding;4.936846428138e-05!GO:0006099;tricarboxylic acid cycle;4.99967303792384e-05!GO:0046356;acetyl-CoA catabolic process;4.99967303792384e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.06621240227643e-05!GO:0015399;primary active transmembrane transporter activity;5.06621240227643e-05!GO:0005085;guanyl-nucleotide exchange factor activity;5.9425603759395e-05!GO:0015934;large ribosomal subunit;6.22613800614291e-05!GO:0030027;lamellipodium;7.76897919319002e-05!GO:0017038;protein import;7.83869205922166e-05!GO:0006259;DNA metabolic process;8.23763277760801e-05!GO:0030425;dendrite;8.29657502611053e-05!GO:0008021;synaptic vesicle;9.26389036501047e-05!GO:0000245;spliceosome assembly;9.43595306578077e-05!GO:0022890;inorganic cation transmembrane transporter activity;9.80321014208418e-05!GO:0016301;kinase activity;0.000100151790007018!GO:0009109;coenzyme catabolic process;0.00010274952966612!GO:0050789;regulation of biological process;0.00010717762533756!GO:0030120;vesicle coat;0.000108097784716943!GO:0030662;coated vesicle membrane;0.000108097784716943!GO:0043492;ATPase activity, coupled to movement of substances;0.000108327090939458!GO:0003714;transcription corepressor activity;0.000143016674515356!GO:0005798;Golgi-associated vesicle;0.000143570129160264!GO:0006732;coenzyme metabolic process;0.000149216916826851!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000155717659268888!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000155770314737926!GO:0050794;regulation of cellular process;0.000178107954521456!GO:0000151;ubiquitin ligase complex;0.000180931882530125!GO:0000159;protein phosphatase type 2A complex;0.000192206231023822!GO:0051187;cofactor catabolic process;0.000193121330177126!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000204803941040697!GO:0006084;acetyl-CoA metabolic process;0.00022964714758667!GO:0043566;structure-specific DNA binding;0.00028145744222436!GO:0046578;regulation of Ras protein signal transduction;0.00029170430348546!GO:0000902;cell morphogenesis;0.00029170430348546!GO:0032989;cellular structure morphogenesis;0.00029170430348546!GO:0048489;synaptic vesicle transport;0.000291989963023264!GO:0006403;RNA localization;0.000311172945265022!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000366206490137315!GO:0003676;nucleic acid binding;0.000375466800594627!GO:0009966;regulation of signal transduction;0.000402669105156529!GO:0050657;nucleic acid transport;0.000404074060940999!GO:0051236;establishment of RNA localization;0.000404074060940999!GO:0050658;RNA transport;0.000404074060940999!GO:0004721;phosphoprotein phosphatase activity;0.000404074060940999!GO:0008219;cell death;0.000421948253798926!GO:0016265;death;0.000421948253798926!GO:0044453;nuclear membrane part;0.000441771136287455!GO:0005643;nuclear pore;0.000441771136287455!GO:0004674;protein serine/threonine kinase activity;0.000454912541211948!GO:0051246;regulation of protein metabolic process;0.000486783983085519!GO:0016311;dephosphorylation;0.000555813708646095!GO:0008601;protein phosphatase type 2A regulator activity;0.000622541838152174!GO:0006613;cotranslational protein targeting to membrane;0.000640511111879291!GO:0003729;mRNA binding;0.000648608036198276!GO:0051087;chaperone binding;0.00066412887790009!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000682383786359347!GO:0008026;ATP-dependent helicase activity;0.000703007631396353!GO:0019902;phosphatase binding;0.000730930384697917!GO:0005793;ER-Golgi intermediate compartment;0.000747750224296579!GO:0019208;phosphatase regulator activity;0.000759709258219739!GO:0012501;programmed cell death;0.000782629426665507!GO:0030133;transport vesicle;0.000786097628717614!GO:0045055;regulated secretory pathway;0.000787683351291252!GO:0003724;RNA helicase activity;0.000795600865356676!GO:0006607;NLS-bearing substrate import into nucleus;0.000810236919372033!GO:0006888;ER to Golgi vesicle-mediated transport;0.000810976276677014!GO:0031072;heat shock protein binding;0.000842193763156014!GO:0006915;apoptosis;0.000844163642866837!GO:0005741;mitochondrial outer membrane;0.000901130389910241!GO:0006366;transcription from RNA polymerase II promoter;0.000907704919285056!GO:0016791;phosphoric monoester hydrolase activity;0.0009134534897021!GO:0030118;clathrin coat;0.000944779273798665!GO:0009056;catabolic process;0.001116834326224!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.0011270331687391!GO:0007269;neurotransmitter secretion;0.00115379022171496!GO:0016197;endosome transport;0.00115405900237592!GO:0006606;protein import into nucleus;0.00125365074481361!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00125487087618727!GO:0004812;aminoacyl-tRNA ligase activity;0.00125487087618727!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00125487087618727!GO:0004386;helicase activity;0.0012711593924116!GO:0051276;chromosome organization and biogenesis;0.00128582475809331!GO:0030867;rough endoplasmic reticulum membrane;0.00131866993323641!GO:0007266;Rho protein signal transduction;0.00138882147205904!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00139653261951539!GO:0005773;vacuole;0.0014782802806409!GO:0006470;protein amino acid dephosphorylation;0.0014983404044452!GO:0043623;cellular protein complex assembly;0.00149863336637922!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00155274947856281!GO:0007019;microtubule depolymerization;0.00156816351631377!GO:0004722;protein serine/threonine phosphatase activity;0.00158427026211689!GO:0005938;cell cortex;0.00161236930387274!GO:0005875;microtubule associated complex;0.00161399958485178!GO:0016050;vesicle organization and biogenesis;0.00164106728521938!GO:0030532;small nuclear ribonucleoprotein complex;0.00169546903946906!GO:0051170;nuclear import;0.00173075760349626!GO:0051188;cofactor biosynthetic process;0.00178402517567899!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00189801567211749!GO:0019226;transmission of nerve impulse;0.00189835433607701!GO:0005791;rough endoplasmic reticulum;0.00216216925210482!GO:0051726;regulation of cell cycle;0.00216769590736528!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0021952514669589!GO:0019904;protein domain specific binding;0.00226036357514226!GO:0050767;regulation of neurogenesis;0.00229591089539576!GO:0048468;cell development;0.00234717884913302!GO:0006752;group transfer coenzyme metabolic process;0.0023763760665186!GO:0005813;centrosome;0.00243108427487887!GO:0031901;early endosome membrane;0.00243108427487887!GO:0030426;growth cone;0.00243108427487887!GO:0009892;negative regulation of metabolic process;0.00243108427487887!GO:0043038;amino acid activation;0.00243108427487887!GO:0006418;tRNA aminoacylation for protein translation;0.00243108427487887!GO:0043039;tRNA aminoacylation;0.00243108427487887!GO:0044432;endoplasmic reticulum part;0.00245656144282031!GO:0030427;site of polarized growth;0.00245969239132073!GO:0019888;protein phosphatase regulator activity;0.00245969239132073!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00245991006702726!GO:0022406;membrane docking;0.00252511566802814!GO:0048278;vesicle docking;0.00252511566802814!GO:0003697;single-stranded DNA binding;0.00253090655239036!GO:0006402;mRNA catabolic process;0.00257978275542096!GO:0016740;transferase activity;0.00261486773355687!GO:0031968;organelle outer membrane;0.00267967541148771!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00272113220794484!GO:0019867;outer membrane;0.00276098408757688!GO:0006904;vesicle docking during exocytosis;0.00284802760792809!GO:0005099;Ras GTPase activator activity;0.00288248582303463!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00288248582303463!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00288248582303463!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00288248582303463!GO:0007049;cell cycle;0.00288248582303463!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00323711647133067!GO:0000074;regulation of progression through cell cycle;0.00329193475954424!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00331161660501899!GO:0033673;negative regulation of kinase activity;0.00339742053079196!GO:0006469;negative regulation of protein kinase activity;0.00339742053079196!GO:0006650;glycerophospholipid metabolic process;0.00339753573386095!GO:0051028;mRNA transport;0.00359245356354818!GO:0008154;actin polymerization and/or depolymerization;0.0037844244384409!GO:0003713;transcription coactivator activity;0.00406653495209357!GO:0006892;post-Golgi vesicle-mediated transport;0.00425420355860669!GO:0008654;phospholipid biosynthetic process;0.004392200668945!GO:0008139;nuclear localization sequence binding;0.004392200668945!GO:0019887;protein kinase regulator activity;0.0044891695668298!GO:0015980;energy derivation by oxidation of organic compounds;0.00456489253679844!GO:0030054;cell junction;0.00457961616965663!GO:0031114;regulation of microtubule depolymerization;0.00475909962476057!GO:0007026;negative regulation of microtubule depolymerization;0.00475909962476057!GO:0005516;calmodulin binding;0.00498162842373137!GO:0009108;coenzyme biosynthetic process;0.00499057569394688!GO:0032011;ARF protein signal transduction;0.00499200563557788!GO:0032012;regulation of ARF protein signal transduction;0.00499200563557788!GO:0006333;chromatin assembly or disassembly;0.00509835064658295!GO:0030424;axon;0.0051701877478608!GO:0016481;negative regulation of transcription;0.00520365197961419!GO:0008286;insulin receptor signaling pathway;0.0052077287394451!GO:0048487;beta-tubulin binding;0.00523316030071275!GO:0048167;regulation of synaptic plasticity;0.00539346596580499!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00544906739504438!GO:0043069;negative regulation of programmed cell death;0.00552418280755264!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00557627474044093!GO:0055083;monovalent inorganic anion homeostasis;0.00557627474044093!GO:0055064;chloride ion homeostasis;0.00557627474044093!GO:0030644;cellular chloride ion homeostasis;0.00557627474044093!GO:0006891;intra-Golgi vesicle-mediated transport;0.00560626182890965!GO:0007017;microtubule-based process;0.00560626182890965!GO:0005815;microtubule organizing center;0.00571875751637636!GO:0005100;Rho GTPase activator activity;0.00575084749349642!GO:0050839;cell adhesion molecule binding;0.00586843761787879!GO:0012506;vesicle membrane;0.00595191848888639!GO:0043066;negative regulation of apoptosis;0.00602306807680781!GO:0006916;anti-apoptosis;0.00608813573890436!GO:0016363;nuclear matrix;0.00619954469808424!GO:0051348;negative regulation of transferase activity;0.00621677848111879!GO:0051261;protein depolymerization;0.00628322462323662!GO:0005869;dynactin complex;0.0063059663210477!GO:0043087;regulation of GTPase activity;0.0065182513057446!GO:0046488;phosphatidylinositol metabolic process;0.00699829156711554!GO:0043209;myelin sheath;0.00713200398631844!GO:0006612;protein targeting to membrane;0.00716562718437979!GO:0046467;membrane lipid biosynthetic process;0.00718766067980892!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00726951516949827!GO:0044448;cell cortex part;0.00745099883893351!GO:0005839;proteasome core complex (sensu Eukaryota);0.00761982960949698!GO:0006887;exocytosis;0.00827898355082225!GO:0051168;nuclear export;0.0082801076385194!GO:0001726;ruffle;0.0082801076385194!GO:0051427;hormone receptor binding;0.00839273039443004!GO:0008186;RNA-dependent ATPase activity;0.00841991429231056!GO:0019903;protein phosphatase binding;0.0084835128685426!GO:0048699;generation of neurons;0.00878617267735859!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00883930372523163!GO:0019198;transmembrane receptor protein phosphatase activity;0.00883930372523163!GO:0001505;regulation of neurotransmitter levels;0.00900740991404239!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00928177720172429!GO:0030258;lipid modification;0.00931754318507179!GO:0005048;signal sequence binding;0.00931754318507179!GO:0050811;GABA receptor binding;0.00932139089451169!GO:0000323;lytic vacuole;0.00932139089451169!GO:0005764;lysosome;0.00932139089451169!GO:0003690;double-stranded DNA binding;0.0097748890272488!GO:0042802;identical protein binding;0.0102097987965032!GO:0019207;kinase regulator activity;0.0102097987965032!GO:0042578;phosphoric ester hydrolase activity;0.010244641918443!GO:0031902;late endosome membrane;0.0106915310860686!GO:0043021;ribonucleoprotein binding;0.0108226705606349!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0109127013026648!GO:0051920;peroxiredoxin activity;0.0111095624749217!GO:0050803;regulation of synapse structure and activity;0.0112104871470926!GO:0031124;mRNA 3'-end processing;0.0118494464486904!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0119237556850448!GO:0022008;neurogenesis;0.0119798189807692!GO:0031324;negative regulation of cellular metabolic process;0.0120099785429092!GO:0030384;phosphoinositide metabolic process;0.0125575186982507!GO:0005789;endoplasmic reticulum membrane;0.0128237397174924!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0132452865829249!GO:0048500;signal recognition particle;0.0133365269806293!GO:0030658;transport vesicle membrane;0.0134327615725455!GO:0030742;GTP-dependent protein binding;0.013644878263122!GO:0051252;regulation of RNA metabolic process;0.0136660427693871!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0137704291084816!GO:0045892;negative regulation of transcription, DNA-dependent;0.0140656344870678!GO:0043086;negative regulation of catalytic activity;0.0141471371143159!GO:0035257;nuclear hormone receptor binding;0.0141926222338389!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0142773978976775!GO:0004667;prostaglandin-D synthase activity;0.0142773978976775!GO:0050802;circadian sleep/wake cycle, sleep;0.0142773978976775!GO:0022410;circadian sleep/wake cycle process;0.0142773978976775!GO:0042749;regulation of circadian sleep/wake cycle;0.0142773978976775!GO:0030660;Golgi-associated vesicle membrane;0.0142936617330058!GO:0004672;protein kinase activity;0.0144131985948314!GO:0044433;cytoplasmic vesicle part;0.0152616861582384!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0154632377246829!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0154946436130376!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0160713251100684!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0160713251100684!GO:0035035;histone acetyltransferase binding;0.0165845161553149!GO:0046930;pore complex;0.0166804430658919!GO:0042254;ribosome biogenesis and assembly;0.0167311042690089!GO:0051540;metal cluster binding;0.0171395084251874!GO:0051536;iron-sulfur cluster binding;0.0171395084251874!GO:0008361;regulation of cell size;0.0177001690749347!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0177562576048569!GO:0045296;cadherin binding;0.0177770071946786!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0178923463862267!GO:0051020;GTPase binding;0.0181847048699542!GO:0065007;biological regulation;0.0182677165794987!GO:0030182;neuron differentiation;0.0183165617814249!GO:0007243;protein kinase cascade;0.0187386165731679!GO:0003725;double-stranded RNA binding;0.0187399916629231!GO:0000287;magnesium ion binding;0.0187399916629231!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0187399916629231!GO:0033043;regulation of organelle organization and biogenesis;0.0187399916629231!GO:0065009;regulation of a molecular function;0.0193467688705445!GO:0015629;actin cytoskeleton;0.0194122721237428!GO:0007050;cell cycle arrest;0.0195196642522813!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0197522663967907!GO:0004004;ATP-dependent RNA helicase activity;0.0202900262071867!GO:0008022;protein C-terminus binding;0.0202968409091748!GO:0001666;response to hypoxia;0.0207227552710919!GO:0005774;vacuolar membrane;0.0207492939724249!GO:0030041;actin filament polymerization;0.0217564339723846!GO:0065002;intracellular protein transport across a membrane;0.0220695375165526!GO:0007268;synaptic transmission;0.0221165161377927!GO:0006376;mRNA splice site selection;0.022323660459714!GO:0000389;nuclear mRNA 3'-splice site recognition;0.022323660459714!GO:0006401;RNA catabolic process;0.0223719482868316!GO:0009117;nucleotide metabolic process;0.0225099210990134!GO:0006643;membrane lipid metabolic process;0.0228107477969762!GO:0030132;clathrin coat of coated pit;0.02295007374408!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0229661640921939!GO:0006414;translational elongation;0.0239542745358211!GO:0000059;protein import into nucleus, docking;0.0253036989687293!GO:0005868;cytoplasmic dynein complex;0.0253630530923562!GO:0007272;ensheathment of neurons;0.0253630530923562!GO:0008366;axon ensheathment;0.0253630530923562!GO:0019783;small conjugating protein-specific protease activity;0.0254689583714333!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0255992615773084!GO:0000314;organellar small ribosomal subunit;0.0255992615773084!GO:0005763;mitochondrial small ribosomal subunit;0.0255992615773084!GO:0004298;threonine endopeptidase activity;0.0259553116572364!GO:0030137;COPI-coated vesicle;0.0259553116572364!GO:0042026;protein refolding;0.0279524724401714!GO:0000209;protein polyubiquitination;0.0279524724401714!GO:0043488;regulation of mRNA stability;0.0279524724401714!GO:0043487;regulation of RNA stability;0.0279524724401714!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0280794278940914!GO:0005885;Arp2/3 protein complex;0.0286480153396618!GO:0035258;steroid hormone receptor binding;0.0288365590417973!GO:0004843;ubiquitin-specific protease activity;0.0295629388403395!GO:0000062;acyl-CoA binding;0.0301271404636608!GO:0007034;vacuolar transport;0.0306913025535898!GO:0016049;cell growth;0.0317813616758606!GO:0001508;regulation of action potential;0.0323420036790285!GO:0043407;negative regulation of MAP kinase activity;0.0324670091130224!GO:0005952;cAMP-dependent protein kinase complex;0.0326006583568961!GO:0044456;synapse part;0.0326006583568961!GO:0030030;cell projection organization and biogenesis;0.033346925101846!GO:0048858;cell projection morphogenesis;0.033346925101846!GO:0032990;cell part morphogenesis;0.033346925101846!GO:0006378;mRNA polyadenylation;0.0338231869300247!GO:0017166;vinculin binding;0.034018272308648!GO:0031371;ubiquitin conjugating enzyme complex;0.0341876284423769!GO:0003746;translation elongation factor activity;0.0346126457244065!GO:0005545;phosphatidylinositol binding;0.0348789890951221!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0348789890951221!GO:0035023;regulation of Rho protein signal transduction;0.0353519758712094!GO:0006468;protein amino acid phosphorylation;0.0353519758712094!GO:0008090;retrograde axon cargo transport;0.0355622424575862!GO:0033596;TSC1-TSC2 complex;0.0355622424575862!GO:0033693;neurofilament bundle assembly;0.0355622424575862!GO:0006818;hydrogen transport;0.0361622180806201!GO:0030125;clathrin vesicle coat;0.0362445120808649!GO:0030665;clathrin coated vesicle membrane;0.0362445120808649!GO:0005092;GDP-dissociation inhibitor activity;0.0370102263388342!GO:0031267;small GTPase binding;0.0370102263388342!GO:0030659;cytoplasmic vesicle membrane;0.0372616374860372!GO:0030911;TPR domain binding;0.0375426955657984!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0377326178449042!GO:0045047;protein targeting to ER;0.0377326178449042!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0377326178449042!GO:0015002;heme-copper terminal oxidase activity;0.0377326178449042!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0377326178449042!GO:0004129;cytochrome-c oxidase activity;0.0377326178449042!GO:0043681;protein import into mitochondrion;0.0384539266123059!GO:0030119;AP-type membrane coat adaptor complex;0.0397373204858737!GO:0008088;axon cargo transport;0.0398202033230923!GO:0051789;response to protein stimulus;0.0398477864209686!GO:0006986;response to unfolded protein;0.0398477864209686!GO:0016859;cis-trans isomerase activity;0.0398477864209686!GO:0006974;response to DNA damage stimulus;0.039922622010928!GO:0042995;cell projection;0.0402509783698456!GO:0019911;structural constituent of myelin sheath;0.0404289817088932!GO:0001578;microtubule bundle formation;0.0404578167655581!GO:0031123;RNA 3'-end processing;0.0405822776946421!GO:0017016;Ras GTPase binding;0.0406705936222004!GO:0015992;proton transport;0.0423802257431938!GO:0046839;phospholipid dephosphorylation;0.0425546935656664!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0426249580567846!GO:0009165;nucleotide biosynthetic process;0.0426249580567846!GO:0031109;microtubule polymerization or depolymerization;0.0426249580567846!GO:0003711;transcription elongation regulator activity;0.0426354369747168!GO:0005765;lysosomal membrane;0.0426904124527388!GO:0051539;4 iron, 4 sulfur cluster binding;0.0436297250096779!GO:0019894;kinesin binding;0.0436572522638276!GO:0016579;protein deubiquitination;0.0437751432223753!GO:0004221;ubiquitin thiolesterase activity;0.0438250288469864!GO:0008312;7S RNA binding;0.0463048959285533!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.048063092447941
|sample_id=10157
|sample_id=10157
|sample_note=
|sample_note=

Revision as of 20:16, 25 June 2012


Name:parietal lobe, adult, donor10252
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueparietal lobe
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.389
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis1.061
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.284
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0816
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.15
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.567
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0816
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.15
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0112
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.21
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.308
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.21
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0541
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.265
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.905
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0816
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0718
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.115
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.15
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0577
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0816
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.681
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0816
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.168
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.487
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0316
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0816
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.613
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.71
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0525
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0501
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.674
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0816
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.308
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.487
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.506
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0816
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.818
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.244
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0816
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.15
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.21
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.728
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.693
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.15
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.456
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0816
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.693
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12317

Jaspar motifP-value
MA0002.20.0356
MA0003.10.251
MA0004.10.342
MA0006.10.227
MA0007.10.298
MA0009.10.2
MA0014.10.651
MA0017.16.08332e-4
MA0018.20.441
MA0019.10.693
MA0024.10.89
MA0025.10.407
MA0027.10.567
MA0028.10.0452
MA0029.10.0325
MA0030.10.605
MA0031.10.972
MA0035.20.00473
MA0038.10.47
MA0039.20.105
MA0040.10.834
MA0041.10.437
MA0042.10.973
MA0043.10.981
MA0046.10.00124
MA0047.20.0757
MA0048.10.12
MA0050.10.0219
MA0051.10.0593
MA0052.10.838
MA0055.17.61174e-4
MA0057.10.825
MA0058.10.257
MA0059.10.0752
MA0060.10.99
MA0061.10.00848
MA0062.20.00139
MA0065.21.67388e-4
MA0066.10.0104
MA0067.10.926
MA0068.10.752
MA0069.10.578
MA0070.10.522
MA0071.10.0178
MA0072.10.272
MA0073.10.443
MA0074.10.215
MA0076.10.0769
MA0077.10.288
MA0078.10.723
MA0079.20.755
MA0080.25.66509e-8
MA0081.10.028
MA0083.10.00846
MA0084.10.845
MA0087.10.95
MA0088.10.181
MA0090.10.384
MA0091.10.47
MA0092.10.292
MA0093.10.344
MA0099.27.7007e-20
MA0100.10.55
MA0101.10.00256
MA0102.20.169
MA0103.10.194
MA0104.20.453
MA0105.10.00288
MA0106.10.0406
MA0107.10.00397
MA0108.20.156
MA0111.10.574
MA0112.20.0012
MA0113.10.52
MA0114.18.81304e-4
MA0115.10.296
MA0116.10.00943
MA0117.10.972
MA0119.10.119
MA0122.10.625
MA0124.10.539
MA0125.10.454
MA0131.10.978
MA0135.10.132
MA0136.11.29401e-12
MA0137.20.669
MA0138.20.361
MA0139.10.388
MA0140.16.72451e-4
MA0141.10.00302
MA0142.10.972
MA0143.10.968
MA0144.10.545
MA0145.10.161
MA0146.10.00956
MA0147.10.335
MA0148.10.0892
MA0149.10.0271
MA0150.13.9443e-4
MA0152.10.633
MA0153.10.0592
MA0154.10.0548
MA0155.10.515
MA0156.11.60029e-8
MA0157.10.703
MA0159.10.00524
MA0160.10.00734
MA0162.10.108
MA0163.15.26442e-5
MA0164.10.869
MA0258.10.0106
MA0259.10.91



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12317

Novel motifP-value
10.0594
100.0553
1000.308
1010.573
1020.866
1030.13
1040.125
1050.127
1060.0433
1070.0941
1080.965
1090.00245
110.0124
1100.0458
1110.202
1120.49
1130.577
1140.204
1150.942
1160.138
1170.0103
1180.13
1190.225
120.46
1200.252
1210.276
1220.859
1230.62
1240.0833
1250.213
1260.0281
1270.452
1280.157
1290.599
135.95659e-4
1300.123
1310.0591
1320.666
1330.0812
1340.675
1350.157
1360.00129
1370.904
1380.968
1390.122
140.795
1400.57
1410.7
1420.773
1430.0874
1440.939
1450.102
1460.471
1470.728
1480.205
1490.228
150.112
1500.154
1510.624
1520.0768
1530.814
1540.457
1550.75
1560.452
1570.44
1580.227
1590.0244
160.0434
1600.236
1610.23
1620.732
1630.685
1640.0479
1650.0452
1660.894
1670.889
1680.426
1690.0104
170.133
180.143
190.186
20.851
200.125
210.0627
220.177
230.499
240.0293
250.514
261.51688e-4
270.812
280.608
290.0107
30.0531
300.974
310.856
320.0266
330.0477
340.606
350.679
360.168
370.0391
380.363
390.232
40.783
400.0239
410.289
420.247
430.12
440.203
450.658
460.0832
470.0594
480.049
490.21
50.689
500.333
510.388
520.474
530.911
540.332
550.672
560.436
570.377
580.377
590.0773
60.933
600.0749
610.0523
620.23
630.187
640.22
650.28
660.13
670.442
680.0948
690.323
70.0522
700.0494
710.0122
720.4
730.0268
740.781
750.0421
760.472
770.148
780.00284
790.402
80.0551
800.418
810.709
820.634
830.0323
840.666
850.274
860.235
877.28769e-5
880.82
890.408
90.329
900.135
910.921
920.613
930.93
940.206
950.0125
960.838
970.718
980.299
990.51



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12317


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000922 (embryo)
0000955 (brain)
0001872 (parietal lobe)
0000483 (epithelium)
0000956 (cerebral cortex)
0000033 (head)
0000479 (tissue)
0002346 (neurectoderm)
0000064 (organ part)
0000073 (regional part of nervous system)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000025 (tube)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0002020 (gray matter)
0002791 (regional part of telencephalon)
0003528 (brain grey matter)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0002616 (regional part of brain)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000119 (cell layer)
0005291 (embryonic tissue)
0002780 (regional part of forebrain)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0001017 (central nervous system)
0001016 (nervous system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0003075 (neural plate)
0003056 (pre-chordal neural plate)
0001049 (neural tube)
0006238 (future brain)
0006601 (presumptive ectoderm)
0005068 (neural rod)
0006241 (future spinal cord)
0003080 (anterior neural tube)
0006240 (future forebrain)
0007284 (presumptive neural plate)
0007135 (neural keel)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10157-103A4&oldid=1834835"