Personal tools

FF:10171-103B9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 69: Line 69:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.31355930015841e-272!GO:0005737;cytoplasm;2.48607889216304e-155!GO:0044444;cytoplasmic part;3.43832268813882e-106!GO:0043226;organelle;8.11042754638359e-105!GO:0043229;intracellular organelle;2.57017527441353e-104!GO:0043227;membrane-bound organelle;3.05809213881166e-98!GO:0043231;intracellular membrane-bound organelle;4.91252604406146e-98!GO:0044422;organelle part;1.68125723473519e-72!GO:0044446;intracellular organelle part;1.51183515137623e-71!GO:0032991;macromolecular complex;8.83289026647364e-66!GO:0005515;protein binding;4.00126516016919e-60!GO:0030529;ribonucleoprotein complex;6.40768241806955e-50!GO:0005739;mitochondrion;1.28425667698187e-48!GO:0016043;cellular component organization and biogenesis;5.88216434903724e-46!GO:0003723;RNA binding;2.07292060494098e-43!GO:0015031;protein transport;2.73818759445576e-39!GO:0033036;macromolecule localization;3.25303949390617e-39!GO:0031090;organelle membrane;3.7068520806323e-37!GO:0044429;mitochondrial part;1.86602157770594e-36!GO:0008104;protein localization;1.09573009366441e-35!GO:0043233;organelle lumen;3.83613356178173e-35!GO:0031974;membrane-enclosed lumen;3.83613356178173e-35!GO:0043234;protein complex;4.73830412219834e-35!GO:0045184;establishment of protein localization;5.05050772918754e-35!GO:0044428;nuclear part;6.07608412141509e-33!GO:0046907;intracellular transport;1.43116489347715e-32!GO:0031975;envelope;3.30868900915288e-29!GO:0031967;organelle envelope;4.08975981154004e-29!GO:0051649;establishment of cellular localization;6.20559530012128e-29!GO:0016071;mRNA metabolic process;9.84291499593279e-29!GO:0051641;cellular localization;1.14203286249995e-28!GO:0006396;RNA processing;1.67777682638664e-28!GO:0005840;ribosome;4.77402222167704e-28!GO:0005829;cytosol;2.35774025342155e-27!GO:0044238;primary metabolic process;3.46303106216398e-27!GO:0044237;cellular metabolic process;5.07549674975373e-27!GO:0008380;RNA splicing;5.75770201452559e-27!GO:0016192;vesicle-mediated transport;6.3917542902983e-26!GO:0019538;protein metabolic process;8.5231899911644e-26!GO:0043170;macromolecule metabolic process;1.84695531382833e-25!GO:0006397;mRNA processing;4.87697126666592e-25!GO:0005740;mitochondrial envelope;2.78777614499112e-24!GO:0006886;intracellular protein transport;5.20163777386336e-24!GO:0006119;oxidative phosphorylation;5.20163777386336e-24!GO:0031966;mitochondrial membrane;1.6681659675062e-23!GO:0003735;structural constituent of ribosome;1.93542115085933e-23!GO:0005634;nucleus;3.03336946937033e-23!GO:0044260;cellular macromolecule metabolic process;5.90107380514133e-23!GO:0044267;cellular protein metabolic process;2.33825562867278e-22!GO:0006412;translation;3.2093503130995e-22!GO:0019866;organelle inner membrane;2.10497548919947e-21!GO:0005743;mitochondrial inner membrane;7.87986486632198e-21!GO:0044455;mitochondrial membrane part;4.37814898381877e-20!GO:0033279;ribosomal subunit;7.16884126648579e-20!GO:0006996;organelle organization and biogenesis;9.92697050385501e-20!GO:0031981;nuclear lumen;2.84001846322895e-19!GO:0005681;spliceosome;1.66250352281488e-18!GO:0005794;Golgi apparatus;5.74121928915269e-18!GO:0065003;macromolecular complex assembly;1.35521780307317e-17!GO:0005746;mitochondrial respiratory chain;1.5488512410767e-17!GO:0031982;vesicle;1.60044921196904e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.90654571510223e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.7438682597475e-17!GO:0016462;pyrophosphatase activity;3.77780423026093e-17!GO:0009058;biosynthetic process;6.00608042808619e-17!GO:0031410;cytoplasmic vesicle;8.57650140957505e-17!GO:0000166;nucleotide binding;1.44276241682681e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.48296536799088e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.90325868282925e-16!GO:0003954;NADH dehydrogenase activity;2.90325868282925e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.90325868282925e-16!GO:0031988;membrane-bound vesicle;4.7546007514953e-16!GO:0017111;nucleoside-triphosphatase activity;6.14755923938418e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.24761804936536e-15!GO:0022607;cellular component assembly;1.28888525788757e-15!GO:0044249;cellular biosynthetic process;2.30981188729254e-15!GO:0009059;macromolecule biosynthetic process;2.38513451420953e-15!GO:0016023;cytoplasmic membrane-bound vesicle;2.62065668670867e-15!GO:0031980;mitochondrial lumen;4.34899520982218e-15!GO:0005759;mitochondrial matrix;4.34899520982218e-15!GO:0006457;protein folding;4.46588195396769e-15!GO:0006512;ubiquitin cycle;7.7336541009705e-15!GO:0030964;NADH dehydrogenase complex (quinone);3.81941415585636e-14!GO:0045271;respiratory chain complex I;3.81941415585636e-14!GO:0005747;mitochondrial respiratory chain complex I;3.81941415585636e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.92054870398252e-14!GO:0042773;ATP synthesis coupled electron transport;4.92054870398252e-14!GO:0043283;biopolymer metabolic process;6.05400259169652e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.21453322498818e-14!GO:0044445;cytosolic part;9.67334891817686e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.22055889086527e-13!GO:0012505;endomembrane system;2.0519465760222e-13!GO:0016874;ligase activity;3.31286425018187e-13!GO:0045045;secretory pathway;4.90560103443486e-13!GO:0022618;protein-RNA complex assembly;7.78581336692398e-13!GO:0032553;ribonucleotide binding;2.35899672788957e-12!GO:0032555;purine ribonucleotide binding;2.35899672788957e-12!GO:0048193;Golgi vesicle transport;3.8251282452493e-12!GO:0005654;nucleoplasm;3.90507220631562e-12!GO:0043228;non-membrane-bound organelle;6.17641711386731e-12!GO:0043232;intracellular non-membrane-bound organelle;6.17641711386731e-12!GO:0043412;biopolymer modification;1.073170517094e-11!GO:0017076;purine nucleotide binding;1.45953402982325e-11!GO:0010467;gene expression;1.45953402982325e-11!GO:0048770;pigment granule;1.49061978104497e-11!GO:0042470;melanosome;1.49061978104497e-11!GO:0051082;unfolded protein binding;2.37655667570114e-11!GO:0019829;cation-transporting ATPase activity;3.43845106433581e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.64325884543172e-11!GO:0015935;small ribosomal subunit;3.99505284977378e-11!GO:0043687;post-translational protein modification;4.34103924257756e-11!GO:0044451;nucleoplasm part;7.85229704189651e-11!GO:0008135;translation factor activity, nucleic acid binding;7.9296598095809e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.57543774328805e-11!GO:0006464;protein modification process;1.10093253034167e-10!GO:0030135;coated vesicle;1.10428828486649e-10!GO:0006605;protein targeting;1.29457286824032e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.51120641924546e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.89633792495949e-10!GO:0003924;GTPase activity;2.3916206993472e-10!GO:0019941;modification-dependent protein catabolic process;2.70695986559783e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.70695986559783e-10!GO:0044257;cellular protein catabolic process;3.20352853460552e-10!GO:0006810;transport;3.37129693496766e-10!GO:0000502;proteasome complex (sensu Eukaryota);3.53176036205227e-10!GO:0008565;protein transporter activity;1.02733555779319e-09!GO:0015934;large ribosomal subunit;1.15035281467125e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.12600242305461e-09!GO:0007264;small GTPase mediated signal transduction;2.60797840541637e-09!GO:0044265;cellular macromolecule catabolic process;3.62519537184638e-09!GO:0015986;ATP synthesis coupled proton transport;4.3040234819131e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.3040234819131e-09!GO:0051186;cofactor metabolic process;6.02932704851617e-09!GO:0006793;phosphorus metabolic process;6.30514041019328e-09!GO:0006796;phosphate metabolic process;6.30514041019328e-09!GO:0005761;mitochondrial ribosome;6.64613575571786e-09!GO:0000313;organellar ribosome;6.64613575571786e-09!GO:0005768;endosome;6.90811101635983e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.37675855351122e-09!GO:0000375;RNA splicing, via transesterification reactions;8.37675855351122e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.37675855351122e-09!GO:0016604;nuclear body;9.78414138748746e-09!GO:0008639;small protein conjugating enzyme activity;9.87656356277534e-09!GO:0004842;ubiquitin-protein ligase activity;1.80397134820463e-08!GO:0006413;translational initiation;1.84881440900259e-08!GO:0005525;GTP binding;2.12566360729036e-08!GO:0003743;translation initiation factor activity;2.19605806854456e-08!GO:0044431;Golgi apparatus part;2.19605806854456e-08!GO:0043285;biopolymer catabolic process;2.54694175086725e-08!GO:0016044;membrane organization and biogenesis;2.98641266166007e-08!GO:0044248;cellular catabolic process;3.28173069600741e-08!GO:0019787;small conjugating protein ligase activity;3.33974104217213e-08!GO:0016607;nuclear speck;3.75675018459438e-08!GO:0030163;protein catabolic process;3.86444197740072e-08!GO:0032940;secretion by cell;4.40478795984068e-08!GO:0006446;regulation of translational initiation;5.32826254274794e-08!GO:0008134;transcription factor binding;6.01824092084636e-08!GO:0008092;cytoskeletal protein binding;6.60385789365514e-08!GO:0051234;establishment of localization;6.95830572646815e-08!GO:0005083;small GTPase regulator activity;7.01136762085418e-08!GO:0030695;GTPase regulator activity;7.24324858853668e-08!GO:0051179;localization;8.34131235095406e-08!GO:0007399;nervous system development;8.95516645835027e-08!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.40905934948291e-08!GO:0005783;endoplasmic reticulum;9.69334304420271e-08!GO:0043005;neuron projection;1.67286688416022e-07!GO:0005730;nucleolus;1.86659169327298e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.00370858540743e-07!GO:0006754;ATP biosynthetic process;2.17297276793363e-07!GO:0006753;nucleoside phosphate metabolic process;2.17297276793363e-07!GO:0015630;microtubule cytoskeleton;2.27511973935189e-07!GO:0019717;synaptosome;2.31007332965589e-07!GO:0009060;aerobic respiration;2.7508625370568e-07!GO:0046034;ATP metabolic process;2.78724594291995e-07!GO:0007010;cytoskeleton organization and biogenesis;3.29515826916848e-07!GO:0030136;clathrin-coated vesicle;3.82006950074429e-07!GO:0045333;cellular respiration;3.82006950074429e-07!GO:0006461;protein complex assembly;4.01244334314435e-07!GO:0032559;adenyl ribonucleotide binding;4.0870352060642e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.36295940513557e-07!GO:0009057;macromolecule catabolic process;4.60511900364182e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.65916076932479e-07!GO:0009141;nucleoside triphosphate metabolic process;5.15023542990558e-07!GO:0015631;tubulin binding;5.4317061048771e-07!GO:0032561;guanyl ribonucleotide binding;5.69000159575787e-07!GO:0019001;guanyl nucleotide binding;5.69000159575787e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.69000159575787e-07!GO:0009055;electron carrier activity;7.41974421012913e-07!GO:0031965;nuclear membrane;7.67886366991628e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.67886366991628e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.69395431860814e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.94436709429063e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.94436709429063e-07!GO:0016881;acid-amino acid ligase activity;8.68690349803482e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.03925255571843e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.03925255571843e-06!GO:0006913;nucleocytoplasmic transport;1.04168539193911e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.05084500319861e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.05084500319861e-06!GO:0048471;perinuclear region of cytoplasm;1.10410253520177e-06!GO:0016887;ATPase activity;1.15858408553441e-06!GO:0005524;ATP binding;1.27510696872468e-06!GO:0042623;ATPase activity, coupled;1.38587464585545e-06!GO:0051169;nuclear transport;1.42300503235152e-06!GO:0006164;purine nucleotide biosynthetic process;1.42329723489188e-06!GO:0006163;purine nucleotide metabolic process;1.7441067891823e-06!GO:0030554;adenyl nucleotide binding;1.81578628182257e-06!GO:0006732;coenzyme metabolic process;1.82513347900617e-06!GO:0000139;Golgi membrane;1.97098097046464e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.00387242443289e-06!GO:0016310;phosphorylation;2.07331010074686e-06!GO:0048475;coated membrane;2.11066617168099e-06!GO:0030117;membrane coat;2.11066617168099e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.44407540935594e-06!GO:0009150;purine ribonucleotide metabolic process;2.58925887536293e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.99330742828644e-06!GO:0009259;ribonucleotide metabolic process;3.16444810823201e-06!GO:0005635;nuclear envelope;3.20398366396852e-06!GO:0008287;protein serine/threonine phosphatase complex;3.86274950778494e-06!GO:0005874;microtubule;4.61683572398968e-06!GO:0009260;ribonucleotide biosynthetic process;6.03855341490686e-06!GO:0045259;proton-transporting ATP synthase complex;7.22411688678601e-06!GO:0006099;tricarboxylic acid cycle;8.11116446677597e-06!GO:0046356;acetyl-CoA catabolic process;8.11116446677597e-06!GO:0032446;protein modification by small protein conjugation;9.40551611884648e-06!GO:0019899;enzyme binding;9.83866212592249e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.14245780023058e-05!GO:0015399;primary active transmembrane transporter activity;1.14245780023058e-05!GO:0030120;vesicle coat;1.14703761986615e-05!GO:0030662;coated vesicle membrane;1.14703761986615e-05!GO:0044440;endosomal part;1.27713431311973e-05!GO:0010008;endosome membrane;1.27713431311973e-05!GO:0009109;coenzyme catabolic process;1.49963282951036e-05!GO:0016567;protein ubiquitination;1.50113992338729e-05!GO:0005905;coated pit;1.87454035778724e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.9829387211488e-05!GO:0000245;spliceosome assembly;2.20771106638072e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.27204768221415e-05!GO:0006403;RNA localization;2.4703153761733e-05!GO:0050657;nucleic acid transport;2.48451177298891e-05!GO:0051236;establishment of RNA localization;2.48451177298891e-05!GO:0050658;RNA transport;2.48451177298891e-05!GO:0006084;acetyl-CoA metabolic process;2.87417740128158e-05!GO:0051187;cofactor catabolic process;3.0990137924836e-05!GO:0005769;early endosome;3.82487631408192e-05!GO:0017038;protein import;3.83654645555314e-05!GO:0008017;microtubule binding;5.17652603529545e-05!GO:0006897;endocytosis;5.58105998462095e-05!GO:0010324;membrane invagination;5.58105998462095e-05!GO:0005770;late endosome;5.96355572355186e-05!GO:0005798;Golgi-associated vesicle;6.05054962488362e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.65858679897615e-05!GO:0048523;negative regulation of cellular process;8.58634922598903e-05!GO:0043492;ATPase activity, coupled to movement of substances;8.70057556585285e-05!GO:0006888;ER to Golgi vesicle-mediated transport;8.70057556585285e-05!GO:0044453;nuclear membrane part;8.7304597149898e-05!GO:0005643;nuclear pore;8.84132010806888e-05!GO:0030425;dendrite;9.10820738343132e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;9.14288135273924e-05!GO:0030029;actin filament-based process;0.00010140970324477!GO:0051128;regulation of cellular component organization and biogenesis;0.00011315489764198!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000117347276732289!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000117347276732289!GO:0006259;DNA metabolic process;0.000127944819124169!GO:0044432;endoplasmic reticulum part;0.000128413680166876!GO:0007242;intracellular signaling cascade;0.000135216999743324!GO:0009056;catabolic process;0.000145126450444552!GO:0051188;cofactor biosynthetic process;0.000148681009991807!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000157944051324481!GO:0048489;synaptic vesicle transport;0.000169115879514602!GO:0008021;synaptic vesicle;0.000179366308927805!GO:0003712;transcription cofactor activity;0.000215944403101437!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000224973483923246!GO:0003724;RNA helicase activity;0.000232479116326652!GO:0008026;ATP-dependent helicase activity;0.00023977797994233!GO:0031252;leading edge;0.000242719552324047!GO:0006752;group transfer coenzyme metabolic process;0.000258690234694377!GO:0006613;cotranslational protein targeting to membrane;0.000267539260115378!GO:0006323;DNA packaging;0.000271129438511651!GO:0030133;transport vesicle;0.00030128716526554!GO:0007265;Ras protein signal transduction;0.00030780370600436!GO:0030532;small nuclear ribonucleoprotein complex;0.000324573446930602!GO:0000159;protein phosphatase type 2A complex;0.00033202130384231!GO:0031072;heat shock protein binding;0.00033831523458335!GO:0016564;transcription repressor activity;0.000364991820572684!GO:0051246;regulation of protein metabolic process;0.000384182669812137!GO:0008047;enzyme activator activity;0.000396696592985493!GO:0016568;chromatin modification;0.00042204177913839!GO:0043566;structure-specific DNA binding;0.000422764387116743!GO:0051028;mRNA transport;0.000425956145329246!GO:0016070;RNA metabolic process;0.000433784087401292!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00043881803924401!GO:0007269;neurotransmitter secretion;0.000463745756519118!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000480609136321296!GO:0005096;GTPase activator activity;0.000505218485119943!GO:0003779;actin binding;0.000516607095787063!GO:0008601;protein phosphatase type 2A regulator activity;0.000516687264247165!GO:0051087;chaperone binding;0.000527195093812134!GO:0000151;ubiquitin ligase complex;0.000527195093812134!GO:0019226;transmission of nerve impulse;0.0005438355527528!GO:0003729;mRNA binding;0.000567571081883013!GO:0016050;vesicle organization and biogenesis;0.00061353716234498!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000616002848572598!GO:0004812;aminoacyl-tRNA ligase activity;0.000616002848572598!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000616002848572598!GO:0045055;regulated secretory pathway;0.000616943493889306!GO:0022406;membrane docking;0.000616943493889306!GO:0048278;vesicle docking;0.000616943493889306!GO:0005789;endoplasmic reticulum membrane;0.000641362300323334!GO:0007019;microtubule depolymerization;0.000681476157032097!GO:0045786;negative regulation of progression through cell cycle;0.000722221245608416!GO:0004386;helicase activity;0.000744621593173492!GO:0043038;amino acid activation;0.000744621593173492!GO:0006418;tRNA aminoacylation for protein translation;0.000744621593173492!GO:0043039;tRNA aminoacylation;0.000744621593173492!GO:0043623;cellular protein complex assembly;0.000757305538318535!GO:0042254;ribosome biogenesis and assembly;0.000762754994823246!GO:0016197;endosome transport;0.000803780726219115!GO:0005741;mitochondrial outer membrane;0.000803780726219115!GO:0065002;intracellular protein transport across a membrane;0.00080851657221302!GO:0003697;single-stranded DNA binding;0.00088658565942573!GO:0019208;phosphatase regulator activity;0.000903423483262335!GO:0008654;phospholipid biosynthetic process;0.000964065519596425!GO:0048519;negative regulation of biological process;0.00102989661742583!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0010400007814773!GO:0051056;regulation of small GTPase mediated signal transduction;0.0010400007814773!GO:0006904;vesicle docking during exocytosis;0.0010422202626195!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00107695412442845!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00107695412442845!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00107695412442845!GO:0030118;clathrin coat;0.00109683336038211!GO:0003714;transcription corepressor activity;0.001368759362965!GO:0016311;dephosphorylation;0.00146929662221076!GO:0000314;organellar small ribosomal subunit;0.00148117646188565!GO:0005763;mitochondrial small ribosomal subunit;0.00148117646188565!GO:0000902;cell morphogenesis;0.00148413298968271!GO:0032989;cellular structure morphogenesis;0.00148413298968271!GO:0009108;coenzyme biosynthetic process;0.00149362776621562!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00150114744951523!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00155960218751859!GO:0006892;post-Golgi vesicle-mediated transport;0.00155960218751859!GO:0031968;organelle outer membrane;0.00168698599201965!GO:0019867;outer membrane;0.00168698599201965!GO:0046467;membrane lipid biosynthetic process;0.00176150585968026!GO:0003676;nucleic acid binding;0.00183892924130134!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00189260133546528!GO:0004721;phosphoprotein phosphatase activity;0.00193267613472468!GO:0016791;phosphoric monoester hydrolase activity;0.00197480100556927!GO:0030027;lamellipodium;0.00199631051417221!GO:0005813;centrosome;0.0022006492207407!GO:0006607;NLS-bearing substrate import into nucleus;0.00226760898010484!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00229447607675321!GO:0051170;nuclear import;0.00229577386364646!GO:0031114;regulation of microtubule depolymerization;0.00233262191644075!GO:0007026;negative regulation of microtubule depolymerization;0.00233262191644075!GO:0006606;protein import into nucleus;0.00239350127367594!GO:0019888;protein phosphatase regulator activity;0.00245320935292245!GO:0015980;energy derivation by oxidation of organic compounds;0.00250609796991043!GO:0008186;RNA-dependent ATPase activity;0.00259688845853634!GO:0001505;regulation of neurotransmitter levels;0.00301884442356674!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00306399917039668!GO:0006650;glycerophospholipid metabolic process;0.00307467571186347!GO:0031901;early endosome membrane;0.00309562154799578!GO:0005048;signal sequence binding;0.00324514433360498!GO:0051168;nuclear export;0.00335195852240762!GO:0005773;vacuole;0.00366160438514197!GO:0005793;ER-Golgi intermediate compartment;0.00370783839317173!GO:0005839;proteasome core complex (sensu Eukaryota);0.00372140892749054!GO:0048487;beta-tubulin binding;0.00377748457246887!GO:0006470;protein amino acid dephosphorylation;0.00390096088390995!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00421048873872244!GO:0008219;cell death;0.00421382566105149!GO:0016265;death;0.00421382566105149!GO:0016301;kinase activity;0.00421382566105149!GO:0046930;pore complex;0.00423920245816195!GO:0007017;microtubule-based process;0.00423920245816195!GO:0005875;microtubule associated complex;0.00425601493481654!GO:0005938;cell cortex;0.00461173815832858!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00485769890712654!GO:0030658;transport vesicle membrane;0.00486448420512757!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00490405582125108!GO:0006612;protein targeting to membrane;0.00499503212083837!GO:0012506;vesicle membrane;0.00500115887119778!GO:0005516;calmodulin binding;0.00502779652802339!GO:0030867;rough endoplasmic reticulum membrane;0.00515825043476501!GO:0019902;phosphatase binding;0.00519149371261866!GO:0008139;nuclear localization sequence binding;0.00539851012278007!GO:0048500;signal recognition particle;0.00544454618145725!GO:0030660;Golgi-associated vesicle membrane;0.0054892339727749!GO:0048167;regulation of synaptic plasticity;0.00549588279913722!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00549588279913722!GO:0055083;monovalent inorganic anion homeostasis;0.00549588279913722!GO:0055064;chloride ion homeostasis;0.00549588279913722!GO:0030644;cellular chloride ion homeostasis;0.00549588279913722!GO:0051726;regulation of cell cycle;0.0055170121109649!GO:0050839;cell adhesion molecule binding;0.00565104799956817!GO:0005815;microtubule organizing center;0.00573623911083267!GO:0006402;mRNA catabolic process;0.00575278319921454!GO:0006916;anti-apoptosis;0.00575278319921454!GO:0007005;mitochondrion organization and biogenesis;0.00577442357050268!GO:0030427;site of polarized growth;0.00577442357050268!GO:0016859;cis-trans isomerase activity;0.00593412892203102!GO:0051540;metal cluster binding;0.00624938263531658!GO:0051536;iron-sulfur cluster binding;0.00624938263531658!GO:0030426;growth cone;0.00633453731555542!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00633453731555542!GO:0046488;phosphatidylinositol metabolic process;0.00638882831413014!GO:0006414;translational elongation;0.00658181742858854!GO:0031124;mRNA 3'-end processing;0.006604789056695!GO:0004004;ATP-dependent RNA helicase activity;0.0066049532725803!GO:0043021;ribonucleoprotein binding;0.00663320096335525!GO:0030384;phosphoinositide metabolic process;0.00684808982239903!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00690770398683697!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00694991026751882!GO:0043209;myelin sheath;0.00694991026751882!GO:0004667;prostaglandin-D synthase activity;0.00694991026751882!GO:0050802;circadian sleep/wake cycle, sleep;0.00694991026751882!GO:0022410;circadian sleep/wake cycle process;0.00694991026751882!GO:0042749;regulation of circadian sleep/wake cycle;0.00694991026751882!GO:0012501;programmed cell death;0.00702539618985473!GO:0006915;apoptosis;0.00731314459459504!GO:0006891;intra-Golgi vesicle-mediated transport;0.00734011947420941!GO:0005762;mitochondrial large ribosomal subunit;0.00748395158214492!GO:0000315;organellar large ribosomal subunit;0.00748395158214492!GO:0043069;negative regulation of programmed cell death;0.00779020771597884!GO:0004722;protein serine/threonine phosphatase activity;0.00779135268899217!GO:0005085;guanyl-nucleotide exchange factor activity;0.00779838044164641!GO:0007268;synaptic transmission;0.00798311937821279!GO:0007049;cell cycle;0.00804992717664248!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00806719186245813!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00806719186245813!GO:0004298;threonine endopeptidase activity;0.00806871923127662!GO:0000074;regulation of progression through cell cycle;0.00807951568101771!GO:0046870;cadmium ion binding;0.00823331353688554!GO:0043681;protein import into mitochondrion;0.00840696391698971!GO:0050767;regulation of neurogenesis;0.00844245813615932!GO:0043066;negative regulation of apoptosis;0.00856448077305111!GO:0005791;rough endoplasmic reticulum;0.00858152404404909!GO:0009117;nucleotide metabolic process;0.00859638240869948!GO:0006333;chromatin assembly or disassembly;0.0086773136485778!GO:0051276;chromosome organization and biogenesis;0.00872613808760966!GO:0008154;actin polymerization and/or depolymerization;0.0088720874817758!GO:0046578;regulation of Ras protein signal transduction;0.00894897173227377!GO:0006399;tRNA metabolic process;0.0090626354275545!GO:0005869;dynactin complex;0.00917813162008681!GO:0016363;nuclear matrix;0.00926153641995467!GO:0006091;generation of precursor metabolites and energy;0.00939172704032613!GO:0044433;cytoplasmic vesicle part;0.00959013304451002!GO:0001578;microtubule bundle formation;0.00960734971440251!GO:0030137;COPI-coated vesicle;0.00979440836471707!GO:0030424;axon;0.0100138245639192!GO:0051427;hormone receptor binding;0.0100457923767151!GO:0006364;rRNA processing;0.0100600958939624!GO:0050811;GABA receptor binding;0.0100980422781505!GO:0030258;lipid modification;0.0101599032759462!GO:0050803;regulation of synapse structure and activity;0.0102040061768669!GO:0051261;protein depolymerization;0.0102294473289843!GO:0004674;protein serine/threonine kinase activity;0.0104748345142222!GO:0006818;hydrogen transport;0.0105638208015994!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0107062415204337!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0107062415204337!GO:0008180;signalosome;0.0108306307867712!GO:0030742;GTP-dependent protein binding;0.0109476636827284!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0109722654201882!GO:0045047;protein targeting to ER;0.0109722654201882!GO:0000209;protein polyubiquitination;0.0110226643362158!GO:0051920;peroxiredoxin activity;0.0114257672065538!GO:0031902;late endosome membrane;0.0119127240813097!GO:0048468;cell development;0.0125312421884416!GO:0044448;cell cortex part;0.0125338832634466!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0128845751896785!GO:0033673;negative regulation of kinase activity;0.0129120493437351!GO:0006469;negative regulation of protein kinase activity;0.0129120493437351!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0131969247958459!GO:0015002;heme-copper terminal oxidase activity;0.0131969247958459!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0131969247958459!GO:0004129;cytochrome-c oxidase activity;0.0131969247958459!GO:0016740;transferase activity;0.0134115029732282!GO:0008312;7S RNA binding;0.0142817453208286!GO:0030132;clathrin coat of coated pit;0.0143441536394778!GO:0006974;response to DNA damage stimulus;0.0145478014210947!GO:0016272;prefoldin complex;0.0145998440977557!GO:0006366;transcription from RNA polymerase II promoter;0.0148609765552387!GO:0015992;proton transport;0.0148669115805013!GO:0019887;protein kinase regulator activity;0.0158223310578754!GO:0045296;cadherin binding;0.0158223310578754!GO:0035035;histone acetyltransferase binding;0.0158223310578754!GO:0007272;ensheathment of neurons;0.0160406592596959!GO:0008366;axon ensheathment;0.0160406592596959!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0160600521917019!GO:0030125;clathrin vesicle coat;0.0160600521917019!GO:0030665;clathrin coated vesicle membrane;0.0160600521917019!GO:0031109;microtubule polymerization or depolymerization;0.0160600521917019!GO:0005100;Rho GTPase activator activity;0.0166502324599358!GO:0007266;Rho protein signal transduction;0.0169366568600608!GO:0035257;nuclear hormone receptor binding;0.0171999013924142!GO:0019783;small conjugating protein-specific protease activity;0.017277221272251!GO:0007006;mitochondrial membrane organization and biogenesis;0.0179056312201138!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0179626171722159!GO:0031123;RNA 3'-end processing;0.0184555739261464!GO:0051539;4 iron, 4 sulfur cluster binding;0.0186098249095741!GO:0044456;synapse part;0.0189116955650626!GO:0003746;translation elongation factor activity;0.0189546331766328!GO:0009966;regulation of signal transduction;0.019324627145435!GO:0000323;lytic vacuole;0.0193439433995206!GO:0005764;lysosome;0.0193439433995206!GO:0006643;membrane lipid metabolic process;0.0194101727504277!GO:0031371;ubiquitin conjugating enzyme complex;0.0200084583853924!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0200084583853924!GO:0019198;transmembrane receptor protein phosphatase activity;0.0200084583853924!GO:0048699;generation of neurons;0.0200542232379622!GO:0005868;cytoplasmic dynein complex;0.020285192216671!GO:0030054;cell junction;0.0204739671040746!GO:0001508;regulation of action potential;0.0204739671040746!GO:0005099;Ras GTPase activator activity;0.0214121001309428!GO:0016072;rRNA metabolic process;0.0214567549583534!GO:0042578;phosphoric ester hydrolase activity;0.0215539971746829!GO:0022008;neurogenesis;0.021814754149816!GO:0016126;sterol biosynthetic process;0.0218452494026221!GO:0008250;oligosaccharyl transferase complex;0.0218452494026221!GO:0003725;double-stranded RNA binding;0.0222657368349245!GO:0035258;steroid hormone receptor binding;0.0234333003627082!GO:0000059;protein import into nucleus, docking;0.0236001630495916!GO:0004221;ubiquitin thiolesterase activity;0.0238102206900343!GO:0004843;ubiquitin-specific protease activity;0.0244339757425408!GO:0009165;nucleotide biosynthetic process;0.0246963737729096!GO:0051252;regulation of RNA metabolic process;0.0247484769446306!GO:0030659;cytoplasmic vesicle membrane;0.0247811845221704!GO:0046474;glycerophospholipid biosynthetic process;0.0250282885161754!GO:0003711;transcription elongation regulator activity;0.0252341970715744!GO:0006887;exocytosis;0.0252341970715744!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0258240704216402!GO:0051348;negative regulation of transferase activity;0.0260937331144782!GO:0030041;actin filament polymerization;0.0262082022821012!GO:0030663;COPI coated vesicle membrane;0.0269919914017912!GO:0030126;COPI vesicle coat;0.0269919914017912!GO:0019904;protein domain specific binding;0.027149416353395!GO:0019903;protein phosphatase binding;0.0283384273961833!GO:0007034;vacuolar transport;0.0287817592635479!GO:0006661;phosphatidylinositol biosynthetic process;0.0287817592635479!GO:0008361;regulation of cell size;0.0290918392886077!GO:0042026;protein refolding;0.0291648020154807!GO:0009892;negative regulation of metabolic process;0.0292406858625095!GO:0005885;Arp2/3 protein complex;0.0308094555595794!GO:0006665;sphingolipid metabolic process;0.0310519311445577!GO:0006376;mRNA splice site selection;0.0311994412300032!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0311994412300032!GO:0019894;kinesin binding;0.0316770535932573!GO:0009081;branched chain family amino acid metabolic process;0.0317432759267157!GO:0009066;aspartate family amino acid metabolic process;0.0317487955986053!GO:0019207;kinase regulator activity;0.0320241111800413!GO:0006378;mRNA polyadenylation;0.0322698087029976!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0329763181324396!GO:0032011;ARF protein signal transduction;0.0335364332349832!GO:0032012;regulation of ARF protein signal transduction;0.0335364332349832!GO:0019911;structural constituent of myelin sheath;0.0344951403705201!GO:0016079;synaptic vesicle exocytosis;0.0347238399020273!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0363105156899283!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0366922266689292!GO:0016579;protein deubiquitination;0.036995741818551!GO:0046839;phospholipid dephosphorylation;0.0376281577459236!GO:0030911;TPR domain binding;0.0378008444043056!GO:0051287;NAD binding;0.038425944124997!GO:0008022;protein C-terminus binding;0.0391595325114257!GO:0006695;cholesterol biosynthetic process;0.0401416954710694!GO:0007243;protein kinase cascade;0.0416368374228527!GO:0003713;transcription coactivator activity;0.0417431556709094!GO:0030182;neuron differentiation;0.042845940136609!GO:0032287;myelin maintenance in the peripheral nervous system;0.0430876974500067!GO:0032838;cell projection cytoplasm;0.0430876974500067!GO:0033081;regulation of T cell differentiation in the thymus;0.0430876974500067!GO:0043217;myelin maintenance;0.0430876974500067!GO:0060087;relaxation of vascular smooth muscle;0.0430876974500067!GO:0032839;dendrite cytoplasm;0.0430876974500067!GO:0004576;oligosaccharyl transferase activity;0.0432309384938932!GO:0043086;negative regulation of catalytic activity;0.0433271575918373!GO:0042176;regulation of protein catabolic process;0.0437099811634393!GO:0000287;magnesium ion binding;0.0453696186495804!GO:0016049;cell growth;0.0454983629090505!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0454983629090505!GO:0008286;insulin receptor signaling pathway;0.0455214161894996!GO:0003690;double-stranded DNA binding;0.0456500626053909!GO:0006611;protein export from nucleus;0.0469527488557761!GO:0043087;regulation of GTPase activity;0.0471683940616592!GO:0007611;learning and/or memory;0.0479640630946041!GO:0006383;transcription from RNA polymerase III promoter;0.0484275770694476!GO:0042802;identical protein binding;0.0485190490974968!GO:0005832;chaperonin-containing T-complex;0.0497893747972703
|sample_id=10171
|sample_id=10171
|sample_note=
|sample_note=

Revision as of 20:16, 25 June 2012


Name:parietal lobe - adult, donor10196
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueparietal lobe
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.409
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.574
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.33
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.524
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.251
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.251
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.188
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.161
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.61
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0607
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.829
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.409
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.755
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.691
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.524
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.409
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.251
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.615
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.251
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.251
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.62
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.691
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.905
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.691
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.409
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.409
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.524
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13797

Jaspar motifP-value
MA0002.20.0799
MA0003.10.303
MA0004.10.352
MA0006.10.229
MA0007.10.321
MA0009.10.357
MA0014.10.592
MA0017.10.00253
MA0018.20.1
MA0019.10.807
MA0024.10.699
MA0025.10.991
MA0027.10.539
MA0028.10.0385
MA0029.10.0272
MA0030.10.954
MA0031.10.629
MA0035.20.0276
MA0038.10.575
MA0039.20.0515
MA0040.10.864
MA0041.10.54
MA0042.10.917
MA0043.10.934
MA0046.10.00359
MA0047.20.0332
MA0048.10.078
MA0050.17.18624e-4
MA0051.10.0177
MA0052.10.64
MA0055.10.00124
MA0057.10.891
MA0058.10.287
MA0059.10.134
MA0060.10.832
MA0061.10.0042
MA0062.23.51481e-4
MA0065.24.15726e-4
MA0066.10.0336
MA0067.10.772
MA0068.10.281
MA0069.10.588
MA0070.10.439
MA0071.10.0215
MA0072.10.12
MA0073.10.45
MA0074.10.191
MA0076.10.0616
MA0077.10.0547
MA0078.10.824
MA0079.20.819
MA0080.21.7011e-10
MA0081.10.0148
MA0083.10.0203
MA0084.10.686
MA0087.10.575
MA0088.10.182
MA0090.10.276
MA0091.10.441
MA0092.10.357
MA0093.10.352
MA0099.22.04888e-21
MA0100.10.445
MA0101.13.91649e-4
MA0102.20.0371
MA0103.10.243
MA0104.20.557
MA0105.10.00686
MA0106.10.0441
MA0107.10.00129
MA0108.20.149
MA0111.10.61
MA0112.20.00171
MA0113.10.459
MA0114.10.00208
MA0115.11
MA0116.10.0162
MA0117.10.995
MA0119.10.076
MA0122.10.589
MA0124.10.899
MA0125.10.353
MA0131.10.83
MA0135.10.0923
MA0136.12.92859e-15
MA0137.20.733
MA0138.20.134
MA0139.10.519
MA0140.10.00514
MA0141.10.0119
MA0142.10.697
MA0143.10.537
MA0144.10.414
MA0145.10.177
MA0146.10.00509
MA0147.10.453
MA0148.10.0453
MA0149.10.0426
MA0150.12.12426e-4
MA0152.10.549
MA0153.10.106
MA0154.10.0737
MA0155.10.523
MA0156.11.72023e-11
MA0157.10.537
MA0159.10.00746
MA0160.10.0333
MA0162.10.158
MA0163.11.62681e-4
MA0164.10.9
MA0258.10.0153
MA0259.10.984



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13797

Novel motifP-value
10.109
100.0517
1000.352
1010.361
1020.752
1030.212
1040.22
1050.2
1060.0254
1070.0807
1080.803
1090.00209
110.0159
1100.063
1110.47
1120.71
1130.319
1140.562
1150.89
1160.118
1170.0109
1180.167
1190.264
120.372
1200.234
1210.228
1220.932
1230.746
1240.0124
1250.349
1260.0205
1270.546
1280.178
1290.65
133.39183e-4
1300.0877
1310.0293
1320.682
1330.0182
1340.75
1350.0413
1366.68062e-4
1370.783
1380.936
1390.181
140.783
1400.874
1410.86
1420.979
1430.119
1440.868
1450.129
1460.391
1470.818
1480.432
1490.26
150.091
1500.0979
1510.655
1520.0462
1530.89
1540.308
1550.962
1560.455
1570.332
1580.132
1590.0124
160.0592
1600.37
1610.196
1620.467
1630.712
1640.022
1650.0511
1660.771
1670.608
1680.431
1690.0125
170.106
180.282
190.204
20.736
200.0945
210.0848
220.158
230.422
240.0108
250.442
261.69127e-5
270.974
280.696
290.0111
30.0432
300.986
310.997
320.0123
330.0493
340.487
350.799
360.269
370.0296
380.339
390.137
40.898
400.0516
410.452
420.251
430.123
440.281
450.587
460.0791
470.108
480.048
490.243
50.878
500.163
510.544
520.535
530.961
540.4
550.604
560.473
570.474
580.425
590.0673
60.941
600.0667
610.0392
620.252
630.165
640.278
650.236
660.15
670.42
680.146
690.649
70.0494
700.0934
710.00944
720.379
730.0154
740.726
750.0395
760.462
770.123
780.00184
790.492
80.105
800.443
810.824
820.753
830.0164
840.519
850.392
860.177
874.76243e-5
880.699
890.625
90.274
900.356
910.996
920.898
930.654
940.238
950.00882
960.935
970.625
980.29
990.644



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13797


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000922 (embryo)
0000955 (brain)
0001872 (parietal lobe)
0000483 (epithelium)
0000956 (cerebral cortex)
0000033 (head)
0000479 (tissue)
0002346 (neurectoderm)
0000064 (organ part)
0000073 (regional part of nervous system)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000025 (tube)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0002020 (gray matter)
0002791 (regional part of telencephalon)
0003528 (brain grey matter)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0002616 (regional part of brain)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000119 (cell layer)
0005291 (embryonic tissue)
0002780 (regional part of forebrain)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0001017 (central nervous system)
0001016 (nervous system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0003075 (neural plate)
0003056 (pre-chordal neural plate)
0001049 (neural tube)
0006238 (future brain)
0006601 (presumptive ectoderm)
0005068 (neural rod)
0006241 (future spinal cord)
0003080 (anterior neural tube)
0006240 (future forebrain)
0007284 (presumptive neural plate)
0007135 (neural keel)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10171-103B9&oldid=1834834"