FFCP PHASE1:Hg19::chr12:106976678..106976708,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5992|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9985|TSSclassifier=S|UniProt=Q33E94|association_with_transcript=0bp_to_ENST00000392842,NM_213594_5end|coexpression_cluster_id=C4|description=CAGE_peak_2_at_RFX4_5end|id=chr12:106976678..106976708,+|ontology_enrichment_celltype=CL:0000047!2.10e-14!8;CL:0000540!5.27e-11!6;CL:0000031!5.27e-11!6;CL:0000404!5.27e-11!6;CL:0002319!3.46e-09!25;CL:0000128!7.61e-07!7;CL:0000126!7.61e-07!7;CL:0000127!7.61e-07!7;CL:0002453!7.61e-07!7|ontology_enrichment_celltype_v019=CL:0000128;5.25e-09;7!CL:0000126;5.25e-09;7!CL:0000127;5.25e-09;7!CL:0002605;2.31e-08;3!CL:0002319;1.05e-07;25|ontology_enrichment_celltype_v019_2=CL:0000128,5.40e-09,7;CL:0000126,5.40e-09,7;CL:0000127,5.40e-09,7;CL:0002453,5.40e-09,7;CL:0002605,2.47e-08,3;CL:0000047,4.65e-08,8;CL:0002319,1.06e-07,25|ontology_enrichment_development_v019=UBERON:0006601;1.45e-22;82!UBERON:0006241;3.91e-10;3!UBERON:0003057;3.91e-10;3!UBERON:0006215;2.21e-09;3!UBERON:0010122;1.79e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.42e-105!82;UBERON:0001049!5.21e-104!57;UBERON:0005068!5.21e-104!57;UBERON:0006241!5.21e-104!57;UBERON:0007135!5.21e-104!57;UBERON:0005743!1.78e-102!86;UBERON:0000073!1.33e-99!94;UBERON:0001016!1.33e-99!94;UBERON:0002616!7.91e-88!59;UBERON:0000955!2.58e-81!69;UBERON:0006238!2.58e-81!69;UBERON:0002780!3.62e-79!41;UBERON:0001890!3.62e-79!41;UBERON:0006240!3.62e-79!41;UBERON:0003080!5.18e-77!42;UBERON:0003075!1.33e-73!86;UBERON:0007284!1.33e-73!86;UBERON:0002346!1.40e-69!90;UBERON:0002020!1.21e-65!34;UBERON:0003528!1.21e-65!34;UBERON:0001893!2.36e-65!34;UBERON:0002791!1.94e-63!33;UBERON:0001869!2.86e-61!32;UBERON:0003056!3.22e-54!61;UBERON:0004121!5.04e-52!169;UBERON:0000924!2.24e-50!173;UBERON:0006601!2.24e-50!173;UBERON:0000956!7.28e-47!25;UBERON:0000203!7.28e-47!25;UBERON:0000033!1.31e-45!123;UBERON:0007023!1.51e-45!115;UBERON:0000153!1.01e-42!129;UBERON:0007811!1.01e-42!129;UBERON:0002619!7.42e-42!22;UBERON:0001950!1.50e-37!20;UBERON:0003076!1.76e-26!15;UBERON:0003057!1.76e-26!15;UBERON:0004732!6.40e-22!13;UBERON:0004733!2.35e-20!12;UBERON:0002028!2.35e-20!12;UBERON:0007277!2.35e-20!12;UBERON:0002420!6.96e-20!9;UBERON:0007245!6.96e-20!9;UBERON:0010009!6.96e-20!9;UBERON:0010011!6.96e-20!9;UBERON:0000454!6.96e-20!9;UBERON:0002308!7.43e-20!9;UBERON:0000125!7.43e-20!9;UBERON:0000025!2.33e-19!194;UBERON:0009663!9.63e-16!7;UBERON:0001894!9.67e-15!7;UBERON:0006222!9.67e-15!7;UBERON:0002680!2.50e-14!9;UBERON:0001895!2.50e-14!9;UBERON:0010092!2.50e-14!9;UBERON:0002298!1.80e-13!8;UBERON:0004111!2.35e-13!241;UBERON:0001871!2.65e-13!7;UBERON:0000200!3.28e-13!6;UBERON:0000349!5.83e-12!5;UBERON:0000064!1.83e-11!219;UBERON:0001872!4.64e-11!5;UBERON:0002021!4.74e-11!5;UBERON:0000369!1.00e-09!4;UBERON:0002435!1.00e-09!4;UBERON:0000204!1.00e-09!4;UBERON:0010082!1.00e-09!4;UBERON:0000119!1.09e-09!312;UBERON:0000477!1.25e-09!286;UBERON:0000483!2.20e-09!309;UBERON:0003296!1.02e-08!4;UBERON:0010133!1.02e-08!4;UBERON:0002037!1.15e-08!6;UBERON:0006215!1.15e-08!6;UBERON:0000475!1.56e-08!365;UBERON:0000922!2.87e-08!612;UBERON:0002240!7.34e-08!3;UBERON:0005383!7.34e-08!3;UBERON:0005382!7.34e-08!3;UBERON:0001896!7.85e-08!3;UBERON:0005290!7.85e-08!3;UBERON:0010096!7.85e-08!3;UBERON:0002771!9.56e-08!3;UBERON:0006331!1.04e-07!3;UBERON:0000988!1.61e-07!3|ontology_enrichment_uberon_v019=UBERON:0000073;6.96e-77;53!UBERON:0002616;6.96e-77;53!UBERON:0001893;3.01e-76;34!UBERON:0002780;4.16e-76;41!UBERON:0001890;4.16e-76;41!UBERON:0003528;5.60e-76;34!UBERON:0002020;5.60e-76;34!UBERON:0002791;3.86e-75;32!UBERON:0001869;5.19e-75;32!UBERON:0000956;1.66e-63;25!UBERON:0000203;1.66e-63;25!UBERON:0002619;1.24e-56;22!UBERON:0000955;6.98e-52;68!UBERON:0001950;9.61e-51;20!UBERON:0001017;1.48e-49;75!UBERON:0001016;2.83e-42;83!UBERON:0004732;1.97e-29;13!UBERON:0004733;2.65e-27;12!UBERON:0002028;2.65e-27;12!UBERON:0002420;1.68e-26;9!UBERON:0007245;1.68e-26;9!UBERON:0010009;1.68e-26;9!UBERON:0010011;1.68e-26;9!UBERON:0000454;1.68e-26;9!UBERON:0000125;1.75e-26;9!UBERON:0002308;1.75e-26;9!UBERON:0009663;7.19e-21;7!UBERON:0001894;1.69e-19;7!UBERON:0002680;4.37e-19;9!UBERON:0001895;4.37e-19;9!UBERON:0002298;4.74e-18;6!UBERON:0000200;2.24e-17;6!UBERON:0007023;9.24e-17;114!UBERON:0000349;1.06e-15;5!UBERON:0001871;6.57e-15;6!UBERON:0002021;1.79e-14;5!UBERON:0001872;1.95e-14;5!UBERON:0011216;5.28e-14;132!UBERON:0000369;1.15e-12;4!UBERON:0002435;1.15e-12;4!UBERON:0000204;1.15e-12;4!UBERON:0002784;4.21e-12;4!UBERON:0002037;2.29e-11;6!UBERON:0003296;2.67e-11;4!UBERON:0010133;2.67e-11;4!UBERON:0002240;3.91e-10;3!UBERON:0005174;3.91e-10;3!UBERON:0005383;3.91e-10;3!UBERON:0001137;3.91e-10;3!UBERON:0005382;3.91e-10;3!UBERON:0001896;4.35e-10;3!UBERON:0005290;4.35e-10;3!UBERON:0010314;7.51e-10;132!UBERON:0000988;1.12e-09;3!UBERON:0001870;1.63e-09;3!UBERON:0001954;1.61e-07;2!UBERON:0003022;1.61e-07;2!UBERO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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5992 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9985 | |||
|TSSclassifier=S | |||
|UniProt=Q33E94 | |||
|association_with_transcript=0bp_to_ENST00000392842,NM_213594_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_2_at_RFX4_5end | |||
|id=chr12:106976678..106976708,+ | |||
|ontology_enrichment_celltype=CL:0000047!2.10e-14!8;CL:0000540!5.27e-11!6;CL:0000031!5.27e-11!6;CL:0000404!5.27e-11!6;CL:0002319!3.46e-09!25;CL:0000128!7.61e-07!7;CL:0000126!7.61e-07!7;CL:0000127!7.61e-07!7;CL:0002453!7.61e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000128;5.25e-09;7!CL:0000126;5.25e-09;7!CL:0000127;5.25e-09;7!CL:0002605;2.31e-08;3!CL:0002319;1.05e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,5.40e-09,7;CL:0000126,5.40e-09,7;CL:0000127,5.40e-09,7;CL:0002453,5.40e-09,7;CL:0002605,2.47e-08,3;CL:0000047,4.65e-08,8;CL:0002319,1.06e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.45e-22;82!UBERON:0006241;3.91e-10;3!UBERON:0003057;3.91e-10;3!UBERON:0006215;2.21e-09;3!UBERON:0010122;1.79e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p2@RFX4 | |||
}} |
Revision as of 20:38, 10 September 2013
Short description: | p2@RFX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_RFX4_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 0bp_to_ENST00000392842, NM_213594_5end |
EntrezGene: | RFX4 |
HGNC: | 9985 |
UniProt: | Q33E94 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 5.40e-09 | 7 |
macroglial cell | 5.40e-09 | 7 |
astrocyte | 5.40e-09 | 7 |
oligodendrocyte precursor cell | 5.40e-09 | 7 |
astrocyte of the cerebral cortex | 2.47e-08 | 3 |
neuronal stem cell | 4.65e-08 | 8 |
neural cell | 1.06e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.