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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000219,CL:0000183,CL:0000630,CL:0000004,CL:0000134,CL:0000255,CL:0000669,CL:0000650,CL:1000618,CL:1001318,CL:1000497,CL:0002518,CL:0002681,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:1000449,CL:1000746,CL:0002173,CL:1000500
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000219,CL:0000183,CL:0000630,CL:0000004,CL:0000134,CL:0000255,CL:0000669,CL:0000650,CL:1000618,CL:1001318,CL:1000497,CL:0002518,CL:0002681,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:1000449,CL:1000746,CL:0002173,CL:1000500
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|comment=Previously: Renal Glomerular Endothelial Cells, donor2
|comment=Previously:
|created_by=
|created_by=
|creation_date=
|creation_date=
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|has_quality=
|has_quality=
|id=FF:11594-120H1
|id=FF:11594-120H1
|is_a=EFO:0002091;;FF:0000002;;FF:0000154;;FF:0000210
|is_a=EFO:0002091;;FF:0000153
|is_obsolete=
|name=Renal Glomerular Endothelial Cells, donor2
|name=Renal Glomerular Endothelial Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
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|sample_tissue=kidney
|sample_tissue=kidney
|top_motifs=RXR{A,B,G}:1.57600352229;SOX{8,9,10}:1.57211076323;FOX{I1,J2}:1.34806270059;TLX1..3_NFIC{dimer}:1.1999240905;NR5A1,2:1.10724659055;ESRRA:1.01952809194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.924176339997;XCPE1{core}:0.879081520807;PBX1:0.850265443343;HES1:0.822329785222;TP53:0.81965961958;AR:0.815411399944;GZF1:0.813084678989;bHLH_family:0.792662324373;TFAP2{A,C}:0.781003565507;NFATC1..3:0.729677065604;IKZF2:0.694342242277;ZNF148:0.644920580131;ZNF423:0.632737329131;PAX6:0.63113124046;ETS1,2:0.622408174269;ZBTB6:0.615387845416;IKZF1:0.59494966802;ONECUT1,2:0.594106530229;ARID5B:0.587443219429;GATA6:0.554456113461;EBF1:0.534536371791;TFAP4:0.530027179514;ZIC1..3:0.516453904274;LEF1_TCF7_TCF7L1,2:0.431945780217;PAX1,9:0.412751625503;GFI1:0.381397600587;SPZ1:0.374456839316;SPIB:0.369946370739;ELF1,2,4:0.335839296194;HIC1:0.321331230977;GTF2A1,2:0.306082388809;HNF4A_NR2F1,2:0.299933673908;NR3C1:0.295157113094;STAT2,4,6:0.294776226553;UFEwm:0.276877925548;TFCP2:0.269511077546;FOXL1:0.265509068224;SMAD1..7,9:0.261281480998;FOXQ1:0.240697781771;SOX2:0.229130196357;TFDP1:0.225351086286;NFE2:0.224367582991;BACH2:0.20956789795;PAX5:0.206375696052;SP1:0.190297731694;HOX{A5,B5}:0.1683220296;MYB:0.159756065776;NFY{A,B,C}:0.158151128123;NKX2-3_NKX2-5:0.154588075805;GFI1B:0.142544709807;REST:0.141967886908;TEAD1:0.140678803105;MYOD1:0.139939430435;TFAP2B:0.139105079824;ALX1:0.13391497049;TAL1_TCF{3,4,12}:0.107589386772;POU6F1:0.102318512931;POU1F1:0.097754671899;ZFP161:0.0974918172206;CRX:0.0807354421814;FOSL2:0.0577245303374;PPARG:0.0541447042705;GLI1..3:0.0529404192664;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0481499410147;PITX1..3:0.0446883358;MTE{core}:0.0420437209802;SOX5:0.0380142152484;RXRA_VDR{dimer}:0.0359881934358;HAND1,2:0.0355259593882;SOX17:0.0332183218369;FOXD3:0.0285238692883;FOXM1:0.0242815602937;NFE2L1:0.0205839225658;FOS_FOS{B,L1}_JUN{B,D}:0.016139528686;SPI1:0.0132012182595;LMO2:-0.00120530927897;POU3F1..4:-0.0116409606495;ZNF238:-0.0154768797809;PAX8:-0.0336167817667;NFE2L2:-0.0386265834985;RBPJ:-0.0621718622801;E2F1..5:-0.0699375700785;YY1:-0.0740102580611;NKX2-2,8:-0.10663298335;ESR1:-0.121429226595;ZNF143:-0.160272903152;SRF:-0.162458028907;NRF1:-0.169187576705;MTF1:-0.169343874324;LHX3,4:-0.172892669471;TBP:-0.173388855641;NFKB1_REL_RELA:-0.174891228901;NANOG:-0.181719040331;POU2F1..3:-0.184275748155;HBP1_HMGB_SSRP1_UBTF:-0.204073979929;GATA4:-0.209117841441;NANOG{mouse}:-0.209949234722;ADNP_IRX_SIX_ZHX:-0.255627473543;HNF1A:-0.263077363344;HOX{A6,A7,B6,B7}:-0.270087380905;MED-1{core}:-0.284110994256;HOXA9_MEIS1:-0.286306823705;MEF2{A,B,C,D}:-0.306582891878;PAX2:-0.309033190841;NR6A1:-0.31806898182;RFX1:-0.318941287375;CUX2:-0.334059919108;EP300:-0.342644721119;KLF4:-0.345906704382;DMAP1_NCOR{1,2}_SMARC:-0.347798443824;SNAI1..3:-0.354765997941;GTF2I:-0.356541635116;NHLH1,2:-0.359583207422;IRF1,2:-0.377359386337;EN1,2:-0.403614819532;NKX3-2:-0.405926027778;PATZ1:-0.415430454242;GCM1,2:-0.437778826057;RORA:-0.440028108598;RREB1:-0.453864412755;VSX1,2:-0.460398800524;MZF1:-0.469783903428;ATF6:-0.47826436448;XBP1:-0.479566695747;CDC5L:-0.497132329788;CREB1:-0.504421727786;POU5F1:-0.508170962328;ALX4:-0.517457283847;HMX1:-0.532825702603;ATF2:-0.535213879084;MAZ:-0.540973446211;TBX4,5:-0.54240286306;FOX{D1,D2}:-0.545707981404;FOXP3:-0.552534883022;PAX3,7:-0.568587265608;SREBF1,2:-0.582843130396;EGR1..3:-0.585592415172;EVI1:-0.591514152493;HLF:-0.59192055851;FOXP1:-0.598451574871;T:-0.601839873681;STAT5{A,B}:-0.607131385182;FOX{F1,F2,J1}:-0.609332613791;PRRX1,2:-0.615477617409;PRDM1:-0.6402763675;FOXA2:-0.650958075079;MAFB:-0.661376964682;CEBPA,B_DDIT3:-0.666203612124;TEF:-0.66677032218;RUNX1..3:-0.678957939995;OCT4_SOX2{dimer}:-0.698507126059;JUN:-0.712438192977;TOPORS:-0.727119191309;AIRE:-0.740634552995;NR1H4:-0.742125150067;BREu{core}:-0.743464800925;STAT1,3:-0.754942755922;PAX4:-0.782607045816;ZEB1:-0.821674065898;BPTF:-0.823777314652;NFIX:-0.845952550982;DBP:-0.857003514708;MYFfamily:-0.858551312261;IRF7:-0.860559122657;TGIF1:-0.882878957599;NKX2-1,4:-0.889998793847;ELK1,4_GABP{A,B1}:-0.890117565456;PDX1:-0.901384617687;HIF1A:-0.93103711131;MYBL2:-0.94150022366;AHR_ARNT_ARNT2:-0.949198149985;HOX{A4,D4}:-0.966599382514;HSF1,2:-1.00074760399;TLX2:-1.0057655062;NKX3-1:-1.01515640604;FOXO1,3,4:-1.05044042253;ZNF384:-1.05462669012;HMGA1,2:-1.07748084921;ATF5_CREB3:-1.08056681357;ZBTB16:-1.10967361699;NFIL3:-1.17368568773;RFX2..5_RFXANK_RFXAP:-1.18863492257;CDX1,2,4:-1.23547450452;FOXN1:-1.24824640502;ATF4:-1.26839056193;NKX6-1,2:-1.44823188906
|top_motifs=RXR{A,B,G}:1.57600352229;SOX{8,9,10}:1.57211076323;FOX{I1,J2}:1.34806270059;TLX1..3_NFIC{dimer}:1.1999240905;NR5A1,2:1.10724659055;ESRRA:1.01952809194;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.924176339997;XCPE1{core}:0.879081520807;PBX1:0.850265443343;HES1:0.822329785222;TP53:0.81965961958;AR:0.815411399944;GZF1:0.813084678989;bHLH_family:0.792662324373;TFAP2{A,C}:0.781003565507;NFATC1..3:0.729677065604;IKZF2:0.694342242277;ZNF148:0.644920580131;ZNF423:0.632737329131;PAX6:0.63113124046;ETS1,2:0.622408174269;ZBTB6:0.615387845416;IKZF1:0.59494966802;ONECUT1,2:0.594106530229;ARID5B:0.587443219429;GATA6:0.554456113461;EBF1:0.534536371791;TFAP4:0.530027179514;ZIC1..3:0.516453904274;LEF1_TCF7_TCF7L1,2:0.431945780217;PAX1,9:0.412751625503;GFI1:0.381397600587;SPZ1:0.374456839316;SPIB:0.369946370739;ELF1,2,4:0.335839296194;HIC1:0.321331230977;GTF2A1,2:0.306082388809;HNF4A_NR2F1,2:0.299933673908;NR3C1:0.295157113094;STAT2,4,6:0.294776226553;UFEwm:0.276877925548;TFCP2:0.269511077546;FOXL1:0.265509068224;SMAD1..7,9:0.261281480998;FOXQ1:0.240697781771;SOX2:0.229130196357;TFDP1:0.225351086286;NFE2:0.224367582991;BACH2:0.20956789795;PAX5:0.206375696052;SP1:0.190297731694;HOX{A5,B5}:0.1683220296;MYB:0.159756065776;NFY{A,B,C}:0.158151128123;NKX2-3_NKX2-5:0.154588075805;GFI1B:0.142544709807;REST:0.141967886908;TEAD1:0.140678803105;MYOD1:0.139939430435;TFAP2B:0.139105079824;ALX1:0.13391497049;TAL1_TCF{3,4,12}:0.107589386772;POU6F1:0.102318512931;POU1F1:0.097754671899;ZFP161:0.0974918172206;CRX:0.0807354421814;FOSL2:0.0577245303374;PPARG:0.0541447042705;GLI1..3:0.0529404192664;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0481499410147;PITX1..3:0.0446883358;MTE{core}:0.0420437209802;SOX5:0.0380142152484;RXRA_VDR{dimer}:0.0359881934358;HAND1,2:0.0355259593882;SOX17:0.0332183218369;FOXD3:0.0285238692883;FOXM1:0.0242815602937;NFE2L1:0.0205839225658;FOS_FOS{B,L1}_JUN{B,D}:0.016139528686;SPI1:0.0132012182595;LMO2:-0.00120530927897;POU3F1..4:-0.0116409606495;ZNF238:-0.0154768797809;PAX8:-0.0336167817667;NFE2L2:-0.0386265834985;RBPJ:-0.0621718622801;E2F1..5:-0.0699375700785;YY1:-0.0740102580611;NKX2-2,8:-0.10663298335;ESR1:-0.121429226595;ZNF143:-0.160272903152;SRF:-0.162458028907;NRF1:-0.169187576705;MTF1:-0.169343874324;LHX3,4:-0.172892669471;TBP:-0.173388855641;NFKB1_REL_RELA:-0.174891228901;NANOG:-0.181719040331;POU2F1..3:-0.184275748155;HBP1_HMGB_SSRP1_UBTF:-0.204073979929;GATA4:-0.209117841441;NANOG{mouse}:-0.209949234722;ADNP_IRX_SIX_ZHX:-0.255627473543;HNF1A:-0.263077363344;HOX{A6,A7,B6,B7}:-0.270087380905;MED-1{core}:-0.284110994256;HOXA9_MEIS1:-0.286306823705;MEF2{A,B,C,D}:-0.306582891878;PAX2:-0.309033190841;NR6A1:-0.31806898182;RFX1:-0.318941287375;CUX2:-0.334059919108;EP300:-0.342644721119;KLF4:-0.345906704382;DMAP1_NCOR{1,2}_SMARC:-0.347798443824;SNAI1..3:-0.354765997941;GTF2I:-0.356541635116;NHLH1,2:-0.359583207422;IRF1,2:-0.377359386337;EN1,2:-0.403614819532;NKX3-2:-0.405926027778;PATZ1:-0.415430454242;GCM1,2:-0.437778826057;RORA:-0.440028108598;RREB1:-0.453864412755;VSX1,2:-0.460398800524;MZF1:-0.469783903428;ATF6:-0.47826436448;XBP1:-0.479566695747;CDC5L:-0.497132329788;CREB1:-0.504421727786;POU5F1:-0.508170962328;ALX4:-0.517457283847;HMX1:-0.532825702603;ATF2:-0.535213879084;MAZ:-0.540973446211;TBX4,5:-0.54240286306;FOX{D1,D2}:-0.545707981404;FOXP3:-0.552534883022;PAX3,7:-0.568587265608;SREBF1,2:-0.582843130396;EGR1..3:-0.585592415172;EVI1:-0.591514152493;HLF:-0.59192055851;FOXP1:-0.598451574871;T:-0.601839873681;STAT5{A,B}:-0.607131385182;FOX{F1,F2,J1}:-0.609332613791;PRRX1,2:-0.615477617409;PRDM1:-0.6402763675;FOXA2:-0.650958075079;MAFB:-0.661376964682;CEBPA,B_DDIT3:-0.666203612124;TEF:-0.66677032218;RUNX1..3:-0.678957939995;OCT4_SOX2{dimer}:-0.698507126059;JUN:-0.712438192977;TOPORS:-0.727119191309;AIRE:-0.740634552995;NR1H4:-0.742125150067;BREu{core}:-0.743464800925;STAT1,3:-0.754942755922;PAX4:-0.782607045816;ZEB1:-0.821674065898;BPTF:-0.823777314652;NFIX:-0.845952550982;DBP:-0.857003514708;MYFfamily:-0.858551312261;IRF7:-0.860559122657;TGIF1:-0.882878957599;NKX2-1,4:-0.889998793847;ELK1,4_GABP{A,B1}:-0.890117565456;PDX1:-0.901384617687;HIF1A:-0.93103711131;MYBL2:-0.94150022366;AHR_ARNT_ARNT2:-0.949198149985;HOX{A4,D4}:-0.966599382514;HSF1,2:-1.00074760399;TLX2:-1.0057655062;NKX3-1:-1.01515640604;FOXO1,3,4:-1.05044042253;ZNF384:-1.05462669012;HMGA1,2:-1.07748084921;ATF5_CREB3:-1.08056681357;ZBTB16:-1.10967361699;NFIL3:-1.17368568773;RFX2..5_RFXANK_RFXAP:-1.18863492257;CDX1,2,4:-1.23547450452;FOXN1:-1.24824640502;ATF4:-1.26839056193;NKX6-1,2:-1.44823188906
|xref=
}}
}}

Revision as of 21:56, 27 June 2012


Name:Renal Glomerular Endothelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeendothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:sc1101
catalog numberSC4005
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00395
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0238
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.196
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.403
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0579
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.141
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.065
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0545
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.476
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.399
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0211
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.66
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0682
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12086

Jaspar motifP-value
MA0002.20.444
MA0003.10.283
MA0004.10.457
MA0006.10.198
MA0007.10.0228
MA0009.10.445
MA0014.10.781
MA0017.10.0997
MA0018.25.77821e-5
MA0019.10.0968
MA0024.10.376
MA0025.10.158
MA0027.10.694
MA0028.10.198
MA0029.10.389
MA0030.10.0407
MA0031.10.0132
MA0035.20.0031
MA0038.10.326
MA0039.20.325
MA0040.10.113
MA0041.10.145
MA0042.10.549
MA0043.14.76507e-9
MA0046.10.354
MA0047.20.33
MA0048.10.173
MA0050.10.192
MA0051.10.878
MA0052.10.981
MA0055.10.0324
MA0057.10.325
MA0058.10.274
MA0059.10.246
MA0060.10.0286
MA0061.10.737
MA0062.20.0366
MA0065.20.0524
MA0066.10.316
MA0067.10.113
MA0068.10.764
MA0069.10.106
MA0070.10.0816
MA0071.10.0225
MA0072.10.824
MA0073.10.58
MA0074.10.46
MA0076.10.00271
MA0077.10.00104
MA0078.10.0763
MA0079.20.368
MA0080.20.0119
MA0081.10.299
MA0083.10.612
MA0084.10.728
MA0087.10.988
MA0088.10.341
MA0090.10.453
MA0091.10.537
MA0092.10.902
MA0093.10.434
MA0099.28.22807e-8
MA0100.10.208
MA0101.10.546
MA0102.22.64129e-5
MA0103.10.789
MA0104.20.959
MA0105.10.607
MA0106.10.0039
MA0107.10.65
MA0108.20.776
MA0111.10.962
MA0112.20.176
MA0113.10.109
MA0114.10.331
MA0115.10.938
MA0116.10.439
MA0117.10.144
MA0119.10.0423
MA0122.10.179
MA0124.10.707
MA0125.10.809
MA0131.10.337
MA0135.10.435
MA0136.10.448
MA0137.20.112
MA0138.20.286
MA0139.10.178
MA0140.10.084
MA0141.14.63689e-4
MA0142.10.83
MA0143.10.991
MA0144.10.245
MA0145.10.127
MA0146.10.0952
MA0147.10.722
MA0148.10.0587
MA0149.10.0564
MA0150.10.146
MA0152.10.835
MA0153.10.363
MA0154.10.215
MA0155.10.0367
MA0156.10.433
MA0157.10.178
MA0159.10.08
MA0160.10.0667
MA0162.10.0457
MA0163.10.159
MA0164.10.576
MA0258.10.456
MA0259.10.679



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12086

Novel motifP-value
10.413
100.849
1000.497
1010.174
1020.577
1030.628
1040.994
1050.811
1060.226
1070.0438
1080.295
1090.092
110.0254
1100.0192
1110.275
1120.259
1130.829
1140.333
1150.564
1160.447
1170.52
1180.275
1190.31
120.319
1200.0215
1210.761
1220.994
1230.0704
1240.185
1250.833
1260.675
1270.984
1280.45
1290.0691
130.247
1300.991
1310.0956
1320.108
1330.498
1340.867
1350.0567
1360.101
1370.447
1380.992
1390.793
140.981
1400.3
1410.518
1420.908
1430.0872
1440.407
1450.291
1460.35
1470.163
1480.328
1490.036
150.676
1500.233
1510.661
1520.0631
1530.066
1540.321
1550.836
1560.194
1570.508
1580.453
1590.327
160.65
1600.00593
1610.701
1620.248
1630.701
1640.419
1650.369
1660.0765
1670.202
1680.343
1690.0334
170.112
180.853
190.161
20.351
200.611
210.663
220.097
230.23
240.708
250.72
260.168
270.114
280.254
290.502
30.567
300.826
310.911
320.866
330.348
340.0424
350.873
360.0768
370.166
380.237
390.284
40.927
400.00422
410.0456
420.668
430.417
440.281
450.274
460.162
470.228
480.0374
490.796
50.967
500.452
510.37
520.696
530.779
540.536
550.759
560.478
570.31
580.412
590.0236
60.458
600.785
610.562
620.859
630.261
640.161
650.103
660.526
670.373
680.0802
690.343
70.724
700.681
710.336
720.454
730.00962
740.478
750.157
760.434
770.0311
780.551
790.101
80.0159
800.764
810.596
820.609
830.949
840.112
850.371
860.95
870.096
880.757
890.157
90.311
900.191
910.38
920.441
930.292
940.832
950.0139
960.521
970.977
980.279
990.00786



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12086


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000034 (stem cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000219 (motile cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0000650 (mesangial cell)
1000618 (juxtaglomerular complex cell)
1001318 (renal interstitial pericyte)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
1000612 (kidney corpuscule cell)
1000449 (epithelial cell of nephron)
1000746 (glomerular cell)
0002173 (extraglomerular mesangial cell)
1000500 (kidney interstitial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0002384 (connective tissue)
0000926 (mesoderm)
0000080 (mesonephros)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000025 (tube)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0003914 (epithelial tube)
0005103 (mesonephric epithelium)
0000083 (mesonephric tubule)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005291 (embryonic tissue)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003891 (stroma)
0003104 (mesenchyme)
0005172 (abdomen element)
0000464 (anatomical space)
0003567 (abdomen connective tissue)
0009201 (nephric duct)
0005256 (trunk mesenchyme)
0003918 (kidney mesenchyme)
0003838 (abdominal segment connective tissue)
0003586 (trunk connective tissue)
0006598 (presumptive structure)
0003886 (body cavity precursor)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0005169 (interstitial tissue)
0001231 (nephron tubule)
0004810 (nephron tubule epithelium)
0002532 (epiblast (generic))
0006553 (renal duct)
0002321 (extraglomerular mesangium)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001285 (nephron)
0005215 (kidney interstitium)
0001229 (renal corpuscle)
0002303 (juxtaglomerular apparatus)
0001008 (renal system)
0003074 (mesonephric duct)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0003887 (intraembryonic coelom)
0002319 (mesangium)
0002120 (pronephros)
0009142 (entire embryonic mesenchyme)
0003081 (lateral plate mesoderm)
0003064 (intermediate mesoderm)
0001230 (glomerular capsule)
0004875 (nephrogenic cord)
0003220 (metanephric mesenchyme)
0005749 (glomerular tuft)
0006603 (presumptive mesoderm)
0004876 (urogenital ridge)
0004199 (S-shaped body)
0004208 (nephrogenic mesenchyme)
0005095 (kidney rudiment)
0005721 (pronephric mesoderm)
0005754 (rostral part of nephrogenic cord)
0003060 (pronephric duct)
0004209 (renal vesicle)
0004198 (comma-shaped body)
0007687 (kidney field)
0007297 (presumptive pronephric mesoderm)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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